Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18575 | Canola | nucleus | 71.76 | 88.07 |
| Bra037533.1-P | Field mustard | nucleus | 77.55 | 86.34 |
| CDX99242 | Canola | nucleus | 69.44 | 84.75 |
| CDY58256 | Canola | nucleus | 76.62 | 84.65 |
| CDX92320 | Canola | nucleus | 69.44 | 84.51 |
| Bra022409.1-P | Field mustard | nucleus | 69.21 | 84.46 |
| Bra001742.1-P | Field mustard | nucleus | 67.59 | 82.25 |
| CDY63041 | Canola | nucleus | 67.13 | 81.92 |
| CDX82302 | Canola | nucleus | 68.75 | 81.59 |
| AT1G49720.2 | Thale cress | nucleus | 59.72 | 64.02 |
| VIT_03s0063g00310.t01 | Wine grape | nucleus | 51.85 | 54.77 |
| PGSC0003DMT400059040 | Potato | nucleus | 43.52 | 51.37 |
| EES07580 | Sorghum | nucleus | 40.97 | 51.16 |
| Os08t0472000-01 | Rice | nucleus | 37.04 | 50.31 |
| Zm00001d018178_P001 | Maize | nucleus | 40.74 | 50.14 |
| Os02t0766700-01 | Rice | nucleus | 41.44 | 50.14 |
| PGSC0003DMT400066603 | Potato | nucleus | 47.92 | 50.0 |
| Solyc01g108080.2.1 | Tomato | nucleus | 47.92 | 50.0 |
| TraesCS6A01G333600.2 | Wheat | nucleus | 40.51 | 50.0 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 40.51 | 49.86 |
| KRH50289 | Soybean | nucleus | 48.84 | 49.76 |
| Os06t0211200-01 | Rice | nucleus | 37.04 | 49.38 |
| HORVU6Hr1G080670.1 | Barley | nucleus | 40.74 | 49.3 |
| Zm00001d037170_P001 | Maize | nucleus | 37.96 | 48.52 |
| EER96850 | Sorghum | nucleus | 40.97 | 48.36 |
| HORVU7Hr1G035500.2 | Barley | nucleus | 37.27 | 48.35 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 40.28 | 48.33 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 43.98 | 47.74 |
| KRH71134 | Soybean | nucleus | 48.38 | 47.61 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 37.27 | 47.35 |
| Zm00001d044940_P002 | Maize | nucleus | 38.43 | 47.29 |
| KXG19586 | Sorghum | nucleus | 37.96 | 47.13 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 40.05 | 47.01 |
| Solyc11g044560.1.1 | Tomato | nucleus | 43.29 | 46.87 |
| OQU80633 | Sorghum | nucleus | 41.44 | 46.86 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 39.58 | 46.72 |
| AT4G34000.2 | Thale cress | nucleus | 49.07 | 46.7 |
| TraesCS7A01G170600.1 | Wheat | nucleus | 37.04 | 46.65 |
| Os09t0456200-01 | Rice | nucleus | 40.51 | 46.54 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 39.35 | 46.45 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 37.04 | 46.38 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 39.35 | 46.32 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 40.97 | 46.21 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 41.44 | 46.13 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 42.82 | 45.91 |
| OQU78764 | Sorghum | nucleus | 33.1 | 45.83 |
| PGSC0003DMT400015892 | Potato | nucleus | 43.75 | 45.65 |
| AT1G45249.6 | Thale cress | nucleus | 44.91 | 45.01 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 42.13 | 44.72 |
| Solyc10g050210.1.1 | Tomato | nucleus | 39.81 | 44.33 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 39.81 | 42.68 |
| Zm00001d050018_P007 | Maize | nucleus | 36.57 | 40.41 |
| Zm00001d031790_P002 | Maize | nucleus | 32.87 | 39.78 |
| Zm00001d020711_P001 | Maize | nucleus | 37.04 | 39.51 |
| AT3G56850.1 | Thale cress | nucleus | 26.16 | 38.05 |
| AT2G41070.4 | Thale cress | nucleus | 23.84 | 38.01 |
| KXG26981 | Sorghum | nucleus | 14.12 | 36.97 |
| Zm00001d005884_P002 | Maize | nucleus | 25.23 | 35.74 |
| AT5G42910.1 | Thale cress | nucleus | 28.94 | 33.78 |
| AT3G44460.1 | Thale cress | nucleus | 25.23 | 32.93 |
| AT2G36270.3 | Thale cress | nucleus | 29.63 | 28.83 |
| AT5G44080.1 | Thale cress | nucleus | 17.59 | 24.13 |
| AT1G03970.1 | Thale cress | nucleus, plastid | 14.58 | 23.33 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:821463 | Symbol:ABF4 | ProteinID:AEE76220.1 | ArrayExpress:AT3G19290 |
| EnsemblPlantsGene:AT3G19290 | RefSeq:AT3G19290 | TAIR:AT3G19290 | RefSeq:AT3G19290-TAIR-G | EnsemblPlants:AT3G19290.3 | TAIR:AT3G19290.3 |
| Unigene:At.23993 | ncoils:Coil | UniProt:F4JB53 | GO:GO:0000976 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009738 |
| GO:GO:0009987 | GO:GO:0019748 | GO:GO:0019760 | GO:GO:0043565 | GO:GO:0044212 | GO:GO:0045893 |
| GO:GO:1900057 | GO:GO:1903648 | InterPro:IPR004827 | RefSeq:NP_001189934.1 | PFAM:PF00170 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | ScanProsite:PS00036 | PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF158 | SMART:SM00338 |
| SUPFAM:SSF57959 | UniParc:UPI0001E92E39 | InterPro:bZIP | SEG:seg | : | : |
Description
ABF4ABRE binding factor 4 [Source:UniProtKB/TrEMBL;Acc:F4JB53]
Coordinates
chr3:+:6687042..6690123
Molecular Weight (calculated)
46623.1 Da
IEP (calculated)
10.197
GRAVY (calculated)
-0.744
Length
432 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTHINFNNL GGGGHPGGEG SSNQMKPTGS VMPLARQSSV YSLTFDELQN TLGGPGKDFG SMNMDELLKS IWTAEEAQAM AMTSAPAATA VAQPGAGIPP
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNEQLK ETSKRPWGSK RQCLRRTLTG PW
101: PGGNLQRQGS LTLPRTISQK TVDEVWKCLI TKDGNMEGSS GGGGESNVPP GRQQTLGEMT LEEFLFRAGV VREDNCVQQM GQVNGNNNNG FYGNSTAAGG
201: LGFGFGQPNQ NSITFNGTND SMILNQPPGL GLKMGGTMQQ QQQQQQLLQQ QQQQMQQLNQ PHPQQRLPQT IFPKQANVAF SAPVNITNKG FAGAANNSIN
301: NNNGLASYGG TGVTVAATSP GTSSAENNSL SPVPYVLNRG RRSNTGLEKV IERRQRRMIK NRESAARSRA RKQAYTLELE AEIEKLKKTN QELQKKQAEM
401: VEMQKNEQLK ETSKRPWGSK RQCLRRTLTG PW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.