Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28083 | Canola | nucleus | 45.91 | 78.06 |
| CDY51041 | Canola | nucleus | 60.79 | 74.24 |
| Bra018800.1-P | Field mustard | nucleus | 67.49 | 73.91 |
| AT3G19290.3 | Thale cress | nucleus | 64.02 | 59.72 |
| Os06t0211200-01 | Rice | nucleus | 35.73 | 44.44 |
| VIT_03s0063g00310.t01 | Wine grape | nucleus | 44.66 | 44.01 |
| PGSC0003DMT400059040 | Potato | nucleus | 39.95 | 43.99 |
| Solyc01g108080.2.1 | Tomato | nucleus | 44.42 | 43.24 |
| TraesCS6A01G333600.2 | Wheat | nucleus | 37.47 | 43.14 |
| TraesCS6B01G364000.1 | Wheat | nucleus | 37.47 | 43.02 |
| Zm00001d037170_P001 | Maize | nucleus | 35.98 | 42.9 |
| KRH50289 | Soybean | nucleus | 44.66 | 42.45 |
| HORVU7Hr1G035500.2 | Barley | nucleus | 34.99 | 42.34 |
| PGSC0003DMT400066603 | Potato | nucleus | 43.42 | 42.27 |
| KXG19586 | Sorghum | nucleus | 36.23 | 41.95 |
| TraesCS6D01G312800.1 | Wheat | nucleus | 37.47 | 41.94 |
| HORVU6Hr1G080670.1 | Barley | nucleus | 36.97 | 41.74 |
| Os02t0766700-01 | Rice | nucleus | 36.97 | 41.74 |
| GSMUA_Achr6P30550_001 | Banana | nucleus | 41.19 | 41.71 |
| OQU78764 | Sorghum | nucleus | 32.01 | 41.35 |
| EES07580 | Sorghum | nucleus | 35.48 | 41.33 |
| Zm00001d018178_P001 | Maize | nucleus | 35.98 | 41.31 |
| Zm00001d044940_P002 | Maize | nucleus | 35.98 | 41.31 |
| GSMUA_Achr6P04270_001 | Banana | nucleus | 39.21 | 41.25 |
| TraesCS7B01G075600.1 | Wheat | nucleus | 34.74 | 41.18 |
| KRH71134 | Soybean | nucleus | 44.66 | 41.0 |
| TraesCS7D01G171300.1 | Wheat | nucleus | 34.99 | 40.87 |
| TraesCS7A01G170600.1 | Wheat | nucleus | 34.74 | 40.82 |
| TraesCS5A01G237200.2 | Wheat | nucleus | 37.22 | 40.76 |
| TraesCS5D01G244500.1 | Wheat | nucleus | 36.72 | 40.44 |
| EER96850 | Sorghum | nucleus | 36.72 | 40.44 |
| HORVU5Hr1G068230.1 | Barley | nucleus | 36.72 | 40.33 |
| OQU80633 | Sorghum | nucleus | 38.21 | 40.31 |
| TraesCS5B01G235600.2 | Wheat | nucleus | 36.48 | 40.16 |
| Os08t0472000-01 | Rice | nucleus | 31.51 | 39.94 |
| Solyc11g044560.1.1 | Tomato | nucleus | 39.21 | 39.6 |
| Os09t0456200-01 | Rice | nucleus | 36.72 | 39.36 |
| GSMUA_Achr5P24570_001 | Banana | nucleus | 37.72 | 39.18 |
| AT2G41070.4 | Thale cress | nucleus | 26.3 | 39.11 |
| GSMUA_Achr9P27130_001 | Banana | nucleus | 38.96 | 38.96 |
| GSMUA_Achr5P05690_001 | Banana | nucleus | 38.96 | 38.57 |
| PGSC0003DMT400015892 | Potato | nucleus | 39.45 | 38.41 |
| AT1G45249.6 | Thale cress | nucleus | 40.94 | 38.28 |
| Solyc10g050210.1.1 | Tomato | nucleus | 36.72 | 38.14 |
| AT4G34000.2 | Thale cress | nucleus | 42.43 | 37.67 |
| AT3G56850.1 | Thale cress | nucleus | 27.54 | 37.37 |
| GSMUA_Achr3P07000_001 | Banana | nucleus | 36.97 | 36.97 |
| Zm00001d031790_P002 | Maize | nucleus | 32.51 | 36.69 |
| Zm00001d020711_P001 | Maize | nucleus | 36.23 | 36.05 |
| KXG26981 | Sorghum | nucleus | 14.39 | 35.15 |
| Zm00001d050018_P007 | Maize | nucleus | 33.5 | 34.53 |
| Zm00001d005884_P002 | Maize | nucleus | 25.56 | 33.77 |
| AT3G44460.1 | Thale cress | nucleus | 27.05 | 32.93 |
| AT5G42910.1 | Thale cress | nucleus | 28.29 | 30.81 |
| AT2G36270.3 | Thale cress | nucleus | 30.02 | 27.25 |
| AT1G03970.1 | Thale cress | nucleus, plastid | 14.64 | 21.85 |
| AT5G44080.1 | Thale cress | nucleus | 16.87 | 21.59 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | EntrezGene:841395 | Symbol:ABF1 | ProteinID:AEE32465.1 | ArrayExpress:AT1G49720 |
| EnsemblPlantsGene:AT1G49720 | RefSeq:AT1G49720 | TAIR:AT1G49720 | RefSeq:AT1G49720-TAIR-G | EnsemblPlants:AT1G49720.2 | TAIR:AT1G49720.2 |
| Unigene:At.46187 | ncoils:Coil | UniProt:F4I3C9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009738 | GO:GO:0009987 |
| GO:GO:0043565 | GO:GO:0044212 | InterPro:IPR004827 | RefSeq:NP_001185183.1 | PFAM:PF00170 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00036 |
| PFscan:PS50217 | PANTHER:PTHR22952 | PANTHER:PTHR22952:SF158 | SMART:SM00338 | SUPFAM:SSF57959 | UniParc:UPI0001E92BDA |
| InterPro:bZIP | SEG:seg | : | : | : | : |
Description
ABF1Abscisic acid responsive element-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:F4I3C9]
Coordinates
chr1:+:18400006..18402628
Molecular Weight (calculated)
43897.5 Da
IEP (calculated)
9.444
GRAVY (calculated)
-0.666
Length
403 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTHIDINNL GGDTSRGNES KPLARQSSLY SLTFDELQST LGEPGKDFGS MNMDELLKNI WTAEDTQAFM TTTSSVAAPG PSGFVPGGNG LQRQGSLTLP
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSEVIT FFLYLSKGIF EAASIAGQKT MLEKNPYRSV
401: VRR
101: RTLSQKTVDE VWKYLNSKEG SNGNTGTDAL ERQQTLGEMT LEDFLLRAGV VKEDNTQQNE NSSSGFYANN GAAGLEFGFG QPNQNSISFN GNNSSMIMNQ
201: APGLGLKVGG TMQQQQQPHQ QQLQQPHQRL PPTIFPKQAN VTFAAPVNMV NRGLFETSAD GPANSNMGGA GGTVTATSPG TSSAENNTWS SPVPYVFGRG
301: RRSNTGLEKV VERRQKRMIK NRESAARSRA RKQAYTLELE AEIESLKLVN QDLQKKQAEI MKTHNSEVIT FFLYLSKGIF EAASIAGQKT MLEKNPYRSV
401: VRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.