Factsheet for Solyc10g081350.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc04g012120.2.1
Solyc05g012210.2.1
Solyc11g010200.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G56850.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G56850.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G56850.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G56850.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G56850.1	Solyc04g012120.2.1	AT1G78300.1	21798944
AT3G56850.1	Solyc11g010200.1.1	AT1G78300.1	21798944
AT3G56850.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT3G56850.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT3G56850.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT3G56850.1	Solyc02g088910.2.1	AT3G29575.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072260	Potato	nucleus	96.29	97.12
CDX72108	Canola	nucleus	45.14	62.95
Solyc10g076920.1.1	Tomato	nucleus	50.86	62.9
KRG94991	Soybean	nucleus	56.29	61.56
CDY51261	Canola	nucleus	43.71	61.2
KRG94206	Soybean	nucleus	55.71	60.75
KRH64894	Soybean	nucleus	54.57	60.44
CDY27189	Canola	nucleus	42.57	60.32
Bra014668.1-P	Field mustard	nucleus	38.86	59.39
Bra007274.1-P	Field mustard	nucleus	47.71	59.22
Bra007276.1-P	Field mustard	nucleus	47.71	59.22
KRH57716	Soybean	nucleus	54.57	58.59
CDX67659	Canola	nucleus	42.86	57.92
AT3G56850.1	Thale cress	nucleus	48.86	57.58
CDX76014	Canola	nucleus	44.0	56.83
AT2G41070.4	Thale cress	nucleus	43.43	56.09
CDY47381	Canola	nucleus	46.0	55.52
Solyc01g008980.2.1	Tomato	nucleus	22.86	54.79
CDY57581	Canola	nucleus	41.14	52.94
Bra016953.1-P	Field mustard	nucleus	39.71	52.06
CDY53679	Canola	nucleus	40.57	51.82
Bra004597.1-P	Field mustard	nucleus	41.43	51.6
CDY06946	Canola	nucleus	40.57	51.45
CDX79959	Canola	nucleus	41.43	51.42
Bra003253.1-P	Field mustard	plastid	45.14	39.21
Solyc01g108080.2.1	Tomato	nucleus	35.43	29.95
Solyc10g050210.1.1	Tomato	nucleus	31.71	28.61
Solyc01g009510.1.1	Tomato	nucleus	15.43	28.42
Solyc04g078840.2.1	Tomato	nucleus	36.0	28.19
Solyc11g044560.1.1	Tomato	nucleus	32.0	28.07
Solyc09g009490.2.1	Tomato	nucleus	33.14	27.23
Solyc04g071510.2.1	Tomato	nucleus, plastid	23.43	26.62
Solyc01g104650.2.1	Tomato	nucleus	22.0	25.93

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:K4D322	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF137
SMART:SM00338	SUPFAM:SSF57959	EnsemblPlantsGene:Solyc10g081350.1	EnsemblPlants:Solyc10g081350.1.1	UniParc:UPI00027698D9	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:62451343..62456241

Molecular Weight (calculated)

38398.4 Da

IEP (calculated)

9.224

GRAVY (calculated)

-0.745

Length

350 amino acids

Sequence
(BLAST)

001: MGSQGGGGGG GGGVGVNSIG VTQAQAQAQA HAQDPKTNAL ARQGSLYSLT LDEVQNQLGD LGKPLSNMNL DELLKTVWTV EASQGMGGTD YGVLQHGQDA
101: SGSSLNRQSS ITLTSDLSKK TVDQVWQDIQ QGHKRDRIDR KAQERQPTLG EMTLEDFLVK AGVVAESTPG KKSLGSVLGV DSMALPQQQA QWSQYQMQAM
201: HPLPPQQHQQ QQQNMLPVFM PSHSAQQPLT IVSNPTIDAA YPESQMTMSP TALLGTLSDT QTLGRKRVAP DDVVEKTVER RQKRMIKNRE SAARSRARKQ
301: AYTHELENKV SRLEEENERL KRQKEIEQVL PSVPLPEPKY QLRRTSSAPF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.