Factsheet for Solyc02g030600.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02140.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G02140.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G02140.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G02140.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G02140.1	Solyc01g058740.2.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030600.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030610.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030620.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030630.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g030650.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032670.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032680.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032690.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032710.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g032720.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066840.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066850.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066860.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066870.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066890.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g066900.1.1	AT3G02140.1	18484180
AT3G02140.1	Solyc02g088910.2.1	AT3G02140.1	18484180
AT3G02140.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT3G02140.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT3G02140.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc04g005380.2.1	AT1G13740.1	18484180
AT3G29575.1	Solyc05g012210.2.1	AT1G13740.1	18484180
AT3G29575.1	Solyc04g005380.2.1	AT1G69260.1	18484180
AT3G29575.1	Solyc05g012210.2.1	AT1G69260.1	18484180
AT3G29575.1	Solyc01g058740.2.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030600.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030610.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030620.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030630.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g030650.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032670.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032680.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032690.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032710.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g032720.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066840.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066850.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066860.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066870.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066890.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g066900.1.1	AT3G29575.1	18484180
AT3G29575.1	Solyc02g088910.2.1	AT3G29575.1	18484180
AT3G29575.1	Solyc09g009490.2.1	AT3G44460.1	18484180
AT3G29575.1	Solyc10g076920.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc10g081350.1.1	AT3G56850.1	18484180
AT3G29575.1	Solyc10g076920.1.1	AT3G56850.1	21798944
AT3G29575.1	Solyc10g081350.1.1	AT3G56850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g066840.1.1	Tomato	cytosol	40.67	56.67
Solyc02g066900.1.1	Tomato	cytosol	43.54	28.71
Solyc02g066890.1.1	Tomato	cytosol	44.98	26.18
Solyc02g030630.1.1	Tomato	cytosol	28.23	19.28
AT3G29575.1	Thale cress	nucleus	14.35	12.99
Solyc02g032710.1.1	Tomato	cytosol	8.13	12.59
CDY04085	Canola	nucleus	14.83	12.45
Solyc02g066870.1.1	Tomato	cytosol	9.09	12.1
Bra033105.1-P	Field mustard	nucleus	12.44	11.93
CDY00093	Canola	nucleus	14.35	11.81
Bra036210.1-P	Field mustard	nucleus	14.35	11.76
CDY19988	Canola	nucleus	14.35	11.76
CDY44386	Canola	nucleus	13.4	11.16
CDX91976	Canola	mitochondrion	14.83	10.88
CDX85274	Canola	nucleus	13.4	10.57
CDX86364	Canola	nucleus	13.4	10.49
Bra025400.1-P	Field mustard	nucleus	13.4	10.49
Solyc02g032690.1.1	Tomato	cytosol	11.96	10.42
Bra039157.1-P	Field mustard	cytosol	13.4	10.11
Solyc02g032670.1.1	Tomato	cytosol	12.44	9.92
Bra001031.1-P	Field mustard	mitochondrion	12.92	9.89
CDX74273	Canola	mitochondrion	12.92	9.89
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	12.92	9.78
CDY43256	Canola	mitochondrion	12.92	9.64
GSMUA_Achr9P09330_001	Banana	nucleus	15.31	9.47
Solyc02g088910.2.1	Tomato	nucleus	14.35	9.46
Solyc02g032680.1.1	Tomato	cytosol	5.26	9.17
KRH01286	Soybean	nucleus	15.31	8.49
KRH45047	Soybean	nucleus	15.31	8.36
VIT_14s0068g00300.t01	Wine grape	nucleus	15.31	8.27
EER89528	Sorghum	nucleus	13.88	8.12
Solyc02g030620.1.1	Tomato	cytosol	11.48	8.11
GSMUA_Achr4P32830_001	Banana	nucleus	5.26	8.09
Solyc02g032720.1.1	Tomato	cytosol	13.88	7.84
Solyc04g005380.2.1	Tomato	nucleus	14.35	7.81
Os03t0214200-01	Rice	nucleus	14.83	7.73
GSMUA_Achr5P01470_001	Banana	nucleus	10.53	7.67
EER92642	Sorghum	nucleus	14.35	7.61
GSMUA_Achr6P34980_001	Banana	cytosol	10.05	7.42
Zm00001d048085_P002	Maize	nucleus	13.4	7.12
AT3G02140.1	Thale cress	cytosol	10.53	6.9
Solyc02g030610.1.1	Tomato	cytosol	5.26	6.88
Solyc02g030650.1.1	Tomato	nucleus	5.74	6.67
TraesCS3B01G594200.1	Wheat	cytosol	7.18	6.64
TraesCS4A01G058100.1	Wheat	nucleus	7.66	6.5
TraesCS3D01G532000.1	Wheat	nucleus	5.26	6.47
Solyc05g012210.2.1	Tomato	extracellular, golgi	13.88	6.26
TraesCS4B01G246800.1	Wheat	nucleus	7.18	6.2
HORVU4Hr1G067930.1	Barley	nucleus	11.96	6.19
Solyc02g066860.1.1	Tomato	cytosol	3.83	6.15
TraesCS4D01G246400.1	Wheat	nucleus	11.48	6.06
TraesCS4B01G247000.1	Wheat	nucleus	11.0	5.81
Solyc01g058740.2.1	Tomato	cytosol	1.91	5.63
TraesCS4D01G246100.2	Wheat	nucleus	6.7	5.58
HORVU4Hr1G035770.1	Barley	plastid	2.87	5.41
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	12.44	5.09
Solyc02g032140.1.1	Tomato	cytosol	2.87	4.84
Solyc02g066850.1.1	Tomato	cytosol	1.44	4.55
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	1.44	4.41

Protein Annotations

EnsemblPlants:Solyc02g030600.1.1	EnsemblPlantsGene:Solyc02g030600.1	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Ninja_fam	PANTHER:PTHR31413	PANTHER:PTHR31413:SF10	UniParc:UPI0002768DD0	UniProt:K4B5A8	MapMan:35.2

Description

No Description!

Coordinates

chr2:+:26480564..26481193

Molecular Weight (calculated)

25105.0 Da

IEP (calculated)

4.967

GRAVY (calculated)

-1.097

Length

209 amino acids

Sequence
(BLAST)

001: MEKANHQDKG KRIVEDVSVD LTLGLPMETQ MEYWRQMNLL PPMETEMEWR QQNYPFSVTR TSPLTRDTEI EWRQRLEAEI TWRRRMNAEI EGRKRLEAEM
101: DWRRRMDTKI ECRRRMETEM EWRKIHGPFS VMRTASMPPM ETQTEWGQMS DPFSVNRTAS LPPLETGEDW MQQDDPFLTM RTASLPPMET GMDLKERRDL
201: QTQTRGDAQ

Best Arabidopsis Sequence Match ( AT1G63490.3 )
(BLAST)

0001: MRKTLPDLFD AQPDLLFQLV TMLSPTVLQE NKVPVYTVLQ EPGNFVITFP KSFHAGFNFG LNCAEAVNFA TADWLPYGGS GAELYRLYRK PSVISHEELL
0101: CVVAKGNCCN NEGSIHLKKE LLRIYSKEKT WREQLWKSGI LRSSPMFVPE CADSVGIEED PTCIICQQFL HLSAIVCNCR PSVFACLEHW KHLCECEPTK
0201: LRLEYRYTLA ELDMMVQEVE KFGGCKTQET KISQRPSSGT KRSIALNKKE GMQVSQARPA DKWLLRASKV LDAAFSSVEY ATLLKESEQF LWAGSEMDRV
0301: RDVTKSLNKA KIWAEAVSDC LSKVEGEVND DSMKVHLEFI DELLRVNPVP CFNSGYLKLK DYAEEARKLS EKIDSALSSS PTITQLELLH SEVSRSPISL
0401: KKHEILSKKI SSAKMLAKRA KRYLTDAKPP GIEMDALFKL NSEMLELHVQ LPETEGILDL VKKSESARDK SNKVLTGSLS LENVEELLHE FDSFSINVPE
0501: LNILRQYHVD TLSWISRFND VMVDVREGKD QRKLISDLSS LLRDGASLGI QVEGLPLVEV ELKKASCREK ARTVYTARKS LDFIEQLLSE AVILHIEEEE
0601: IFVEISGILS TARCWEERAS TILENETQMY ELKDLVRMSV NIDAVLPTLQ GIENTISSAE TWLQKSEPFL SATSSMASSP CSMLELPVLK DLVTQAKLLN
0701: VQLQEPRILE TLLLNCERWQ CDNHQLLQET EDLLDNAKID DGTHSNILPK IMDLITRVDS ARRSGLALGL NFDELPKLRT ASLKLGWCCK TITLSSSSPT
0801: SELLEDVGKP SLQHIQQHLK EGQTLEILPE EYYLGKRLME LKDTGLEWAK RARKVVTDSG ALALEDVFEL ISEGENLPVH AEQELQSLRA RSMLHCICLK
0901: PYNSRSMVSC SQCGEWYHTY CLKLHWRPKA YVCSACCPLA ETTPQIDPAR ATEPERPSLN QRRTRMVATD AAVNDLKWKT RKHIKRTTKR SPQVHILPWF
1001: FT

Arabidopsis Description

transcription factor jumonji (jmjC) domain-containing protein [Source:TAIR;Acc:AT1G63490]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.