Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027018.1-P | Field mustard | cytosol | 48.53 | 55.93 |
| Solyc02g066850.1.1 | Tomato | cytosol | 52.94 | 54.55 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 58.82 | 29.41 |
| HORVU4Hr1G035770.1 | Barley | plastid | 45.59 | 27.93 |
| PGSC0003DMT400051959 | Potato | nucleus | 92.65 | 24.51 |
| Solyc02g032680.1.1 | Tomato | cytosol | 41.18 | 23.33 |
| Solyc02g066860.1.1 | Tomato | cytosol | 41.18 | 21.54 |
| Solyc02g032710.1.1 | Tomato | cytosol | 42.65 | 21.48 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 48.53 | 19.41 |
| Solyc02g032140.1.1 | Tomato | cytosol | 33.82 | 18.55 |
| Solyc02g066870.1.1 | Tomato | cytosol | 42.65 | 18.47 |
| Solyc02g030650.1.1 | Tomato | nucleus | 47.06 | 17.78 |
| Solyc02g030610.1.1 | Tomato | cytosol | 39.71 | 16.88 |
| Solyc01g058740.2.1 | Tomato | cytosol | 16.18 | 15.49 |
| CDY34910 | Canola | peroxisome | 60.29 | 14.7 |
| Bra040367.1-P | Field mustard | nucleus | 60.29 | 14.7 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 48.53 | 14.6 |
| CDX74054 | Canola | nucleus | 60.29 | 14.24 |
| Solyc02g032690.1.1 | Tomato | cytosol | 50.0 | 14.17 |
| CDY08008 | Canola | cytosol | 58.82 | 13.94 |
| Bra001242.1-P | Field mustard | nucleus | 58.82 | 13.89 |
| AT3G07255.1 | Thale cress | nucleus | 58.82 | 13.65 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 55.88 | 13.43 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 70.59 | 13.41 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 44.12 | 12.4 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 51.47 | 12.2 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 44.12 | 12.2 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 44.12 | 11.95 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 58.82 | 11.83 |
| Solyc02g088910.2.1 | Tomato | nucleus | 54.41 | 11.67 |
| Solyc02g032670.1.1 | Tomato | cytosol | 44.12 | 11.45 |
| Solyc02g066900.1.1 | Tomato | cytosol | 52.94 | 11.36 |
| Solyc02g030630.1.1 | Tomato | cytosol | 48.53 | 10.78 |
| Solyc02g030620.1.1 | Tomato | cytosol | 45.59 | 10.47 |
| KRH66123 | Soybean | nucleus | 52.94 | 10.17 |
| KRH07456 | Soybean | nucleus | 51.47 | 10.0 |
| Solyc04g005380.2.1 | Tomato | nucleus | 55.88 | 9.9 |
| Solyc02g032720.1.1 | Tomato | cytosol | 52.94 | 9.73 |
| Solyc02g066890.1.1 | Tomato | cytosol | 50.0 | 9.47 |
| Os03t0214200-01 | Rice | nucleus | 52.94 | 8.98 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 50.0 | 8.59 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 48.53 | 8.33 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 48.53 | 8.17 |
| Zm00001d048085_P002 | Maize | nucleus | 47.06 | 8.14 |
| EER89528 | Sorghum | nucleus | 42.65 | 8.12 |
| EER92642 | Sorghum | nucleus | 47.06 | 8.12 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 51.47 | 7.56 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 50.0 | 6.65 |
| Solyc02g066840.1.1 | Tomato | cytosol | 10.29 | 4.67 |
| Solyc02g030600.1.1 | Tomato | cytosol | 4.41 | 1.44 |
Protein Annotations
| EnsemblPlants:Solyc06g083290.1.1 | EnsemblPlantsGene:Solyc06g083290.1 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PFAM:PF16135 | UniParc:UPI0002765DD7 | UniProt:K4CAI4 |
| MapMan:15.5.53.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:+:48763180..48763386
Molecular Weight (calculated)
7261.9 Da
IEP (calculated)
7.872
GRAVY (calculated)
-0.025
Length
68 amino acids
Sequence
(BLAST)
(BLAST)
1: MPCVSATGNG PNGKTIDGLL CKYDNKMEIK IVCVCHGKSF TPSQFVEHAG GVDLSQPLKH ITVTPPCF
001: MFVESLSMAE KFVEDENVEV ELELELCLSL GGPFKKTEKS KTFGQSNAVG FEKDNGVNLD GRTTNVTRIK ETRKKREAKQ QQRSGEEGEC KRIRTEYNGV
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
101: SNGDDMDLSS INMCNGYGSG RLKESSKDVT IGSPICTSSS VSDPSSSSRQ EGGSGDIGAQ SGQTKQVRSP VNNILTGTEQ TVHNTDGSKD AETQEWSNSS
201: VTKESGKPPK PHTNSNGNGS LLPFAQMPCV TSTGNGPEGK TVNGFLYRYS KSEISIICVC HGTSFSPAEF IVHAGGTNVS HPLRHITVVP STL
Arabidopsis Description
Nuclear transport factor 2/RNA recognition motif protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNF2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.