Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g066850.1.1 | Tomato | cytosol | 21.18 | 54.55 |
| Solyc06g083290.1.1 | Tomato | cytosol, extracellular, plastid | 19.41 | 48.53 |
| HORVU4Hr1G035770.1 | Barley | plastid | 30.59 | 46.85 |
| Bra027018.1-P | Field mustard | cytosol | 15.88 | 45.76 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 59.41 | 44.69 |
| Solyc02g032710.1.1 | Tomato | cytosol | 22.35 | 28.15 |
| Solyc02g032680.1.1 | Tomato | cytosol | 18.24 | 25.83 |
| Solyc02g066870.1.1 | Tomato | cytosol | 23.53 | 25.48 |
| PGSC0003DMT400036544 | Potato | cytosol | 18.82 | 25.2 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 18.82 | 25.2 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 36.47 | 24.7 |
| PGSC0003DMT400089614 | Potato | cytosol | 19.41 | 24.26 |
| Solyc02g066860.1.1 | Tomato | cytosol | 17.65 | 23.08 |
| AT3G29575.1 | Thale cress | nucleus | 30.0 | 22.08 |
| Solyc02g032140.1.1 | Tomato | cytosol | 15.88 | 21.77 |
| Solyc02g030650.1.1 | Tomato | nucleus | 21.76 | 20.56 |
| KRH54707 | Soybean | nucleus | 29.41 | 20.08 |
| CDY00093 | Canola | nucleus | 30.0 | 20.08 |
| Bra036210.1-P | Field mustard | nucleus | 30.0 | 20.0 |
| CDY19988 | Canola | nucleus | 30.0 | 20.0 |
| CDY04085 | Canola | nucleus | 28.82 | 19.68 |
| CDY44386 | Canola | nucleus | 28.82 | 19.52 |
| Solyc02g030610.1.1 | Tomato | cytosol | 18.24 | 19.38 |
| Solyc02g032690.1.1 | Tomato | cytosol | 25.88 | 18.33 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 34.12 | 17.52 |
| TraesCS2D01G183700.1 | Wheat | nucleus | 31.76 | 17.42 |
| CDX85274 | Canola | nucleus | 27.06 | 17.36 |
| Bra025400.1-P | Field mustard | nucleus | 27.06 | 17.23 |
| CDX86364 | Canola | nucleus | 27.06 | 17.23 |
| CDX74273 | Canola | mitochondrion | 27.65 | 17.22 |
| KRH63223 | Soybean | nucleus | 25.88 | 16.92 |
| Solyc02g032670.1.1 | Tomato | cytosol | 25.88 | 16.79 |
| Os03t0214200-01 | Rice | nucleus | 39.41 | 16.71 |
| PGSC0003DMT400051959 | Potato | nucleus | 24.71 | 16.34 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.47 | 16.3 |
| PGSC0003DMT400003712 | Potato | nucleus | 30.0 | 16.24 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 31.76 | 16.12 |
| Bra001031.1-P | Field mustard | mitochondrion | 25.88 | 16.12 |
| Solyc02g088910.2.1 | Tomato | nucleus | 30.0 | 16.09 |
| Bra039157.1-P | Field mustard | cytosol | 25.88 | 15.88 |
| Bra019706.1-P | Field mustard | nucleus | 29.41 | 15.82 |
| CDX91976 | Canola | mitochondrion | 26.47 | 15.79 |
| CDY36406 | Canola | nucleus | 27.06 | 15.75 |
| CDX98125 | Canola | nucleus | 29.41 | 15.67 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 36.47 | 15.66 |
| CDY16104 | Canola | nucleus | 28.24 | 15.53 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 32.35 | 15.49 |
| Solyc01g058740.2.1 | Tomato | cytosol | 6.47 | 15.49 |
| CDY43256 | Canola | mitochondrion | 25.29 | 15.36 |
| Bra004368.1-P | Field mustard | nucleus | 29.41 | 15.34 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 31.76 | 15.3 |
| CDY33807 | Canola | nucleus | 27.65 | 15.21 |
| Bra026891.1-P | Field mustard | nucleus | 27.65 | 15.21 |
| KRH01286 | Soybean | nucleus | 33.53 | 15.12 |
| Solyc02g030630.1.1 | Tomato | cytosol | 27.06 | 15.03 |
| GSMUA_Achr3P15940_001 | Banana | nucleus | 30.59 | 14.9 |
| Solyc02g030620.1.1 | Tomato | cytosol | 25.88 | 14.86 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 31.18 | 14.72 |
| EER92642 | Sorghum | nucleus | 34.12 | 14.72 |
| CDY08008 | Canola | cytosol | 24.71 | 14.63 |
| CDX95951 | Canola | nucleus | 28.82 | 14.58 |
| CDX74054 | Canola | nucleus | 24.71 | 14.58 |
| Bra001242.1-P | Field mustard | nucleus | 24.71 | 14.58 |
| Solyc02g066900.1.1 | Tomato | cytosol | 27.06 | 14.51 |
| Bra004004.1-P | Field mustard | nucleus | 29.41 | 14.45 |
| CDY07354 | Canola | nucleus | 29.41 | 14.41 |
| KRH56804 | Soybean | nucleus | 23.53 | 14.18 |
| PGSC0003DMT400045906 | Potato | nucleus | 32.35 | 14.18 |
| CDY04272 | Canola | nucleus | 28.82 | 14.16 |
| KRH45047 | Soybean | nucleus | 31.76 | 14.1 |
| Zm00001d048085_P002 | Maize | nucleus | 32.35 | 13.99 |
| CDY34910 | Canola | peroxisome | 22.94 | 13.98 |
| AT1G69260.1 | Thale cress | nucleus | 28.24 | 13.91 |
| Solyc04g005380.2.1 | Tomato | nucleus | 31.18 | 13.8 |
| AT1G13740.1 | Thale cress | nucleus | 28.24 | 13.79 |
| Solyc02g066890.1.1 | Tomato | cytosol | 28.82 | 13.65 |
| Bra040367.1-P | Field mustard | nucleus | 22.35 | 13.62 |
| KRH03141 | Soybean | nucleus | 18.82 | 13.62 |
| AT3G02140.1 | Thale cress | cytosol | 25.29 | 13.48 |
| EER89528 | Sorghum | nucleus | 28.24 | 13.45 |
| AT3G07255.1 | Thale cress | nucleus | 22.35 | 12.97 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 29.41 | 12.92 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 32.35 | 12.91 |
| KRH07456 | Soybean | nucleus | 26.47 | 12.86 |
| VIT_00s0216g00060.t01 | Wine grape | nucleus | 27.06 | 12.85 |
| KRH66123 | Soybean | nucleus | 26.47 | 12.71 |
| PGSC0003DMT400072760 | Potato | nucleus | 30.59 | 12.65 |
| Bra033105.1-P | Field mustard | nucleus | 15.88 | 12.39 |
| CDY40905 | Canola | nucleus | 25.29 | 12.32 |
| KRH75067 | Soybean | nucleus | 29.41 | 12.29 |
| KRH70923 | Soybean | nucleus | 29.41 | 12.17 |
| Solyc02g032720.1.1 | Tomato | cytosol | 25.29 | 11.62 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 29.41 | 10.8 |
| VIT_17s0000g05280.t01 | Wine grape | nucleus | 24.71 | 9.84 |
| PGSC0003DMT400091590 | Potato | cytosol | 21.76 | 9.07 |
| Solyc02g066840.1.1 | Tomato | cytosol | 7.65 | 8.67 |
| PGSC0003DMT400036545 | Potato | nucleus | 23.53 | 8.18 |
| Solyc02g030600.1.1 | Tomato | cytosol | 6.47 | 5.26 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G532000.1 | EnsemblPlantsGene:TraesCS3D01G532000 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PFAM:PF16135 | SEG:seg | MapMan:15.5.53.3 |
Description
No Description!
Coordinates
chr3D:-:607978198..607985081
Molecular Weight (calculated)
17989.1 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.360
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAYSRDLMR GIDSGDDGEH RVQRLDSRTE EPAAQGTPSA QGQSMSSAVV SSSQGTNGVH QAEDANNTVM ATASSPGPAV RAATLGSGGG QQEDSEMSKV
101: REIPLVSTSG LPNGRRIVGL LYEYSKVDEV MILCMCHGSF LTPAEFVEHA GGGQVANPLR RIFVMPPPWL
101: REIPLVSTSG LPNGRRIVGL LYEYSKVDEV MILCMCHGSF LTPAEFVEHA GGGQVANPLR RIFVMPPPWL
001: MSKKQRLSEE DGEVEIELDL GLSLNGRFGV DPLAKTRLMR STSVLDLVVN DRSGLSRTCS LPVETEEEWR KRKELQSLRR LEAKRKRSEK QRKHKACGGE
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
101: EKVVEEGSIG SSGSGSSGLS EVDTLLPPVQ ATTNKSVETS PSSAQSQPEN LGKEASQNII EDMPFVSTTG DGPNGKKING FLYRYRKGEE VRIVCVCHGS
201: FLSPAEFVKH AGGGDVAHPL KHIVVNPSPF L
Arabidopsis Description
AFP3Ninja-family protein AFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q94F39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.