Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P32830_001 | Banana | nucleus | 23.78 | 61.03 |
| GSMUA_Achr4P14370_001 | Banana | nucleus | 46.42 | 48.36 |
| GSMUA_Achr6P27430_001 | Banana | nucleus | 46.42 | 45.63 |
| GSMUA_Achr3P30390_001 | Banana | nucleus | 40.69 | 42.9 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 34.38 | 41.81 |
| GSMUA_Achr7P26660_001 | Banana | nucleus | 42.12 | 41.64 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 40.11 | 41.42 |
| GSMUA_Achr9P07070_001 | Banana | mitochondrion | 47.56 | 38.97 |
| HORVU4Hr1G035770.1 | Barley | plastid | 12.03 | 37.84 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 27.79 | 34.28 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 14.9 | 30.59 |
| Os03t0214200-01 | Rice | nucleus | 34.67 | 30.17 |
| EER89528 | Sorghum | nucleus | 29.51 | 28.85 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 18.62 | 28.76 |
| EER92642 | Sorghum | nucleus | 31.23 | 27.66 |
| Zm00001d048085_P002 | Maize | nucleus | 29.8 | 26.46 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 17.77 | 25.62 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 28.65 | 25.25 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 29.23 | 25.25 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 28.37 | 25.0 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 17.48 | 24.8 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 17.77 | 24.7 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.8 | 20.35 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P15940_001 | EnsemblPlants:GSMUA_Achr3T15940_001 | EnsemblPlantsGene:GSMUA_Achr3G15940_001 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | SEG:seg |
| UniParc:UPI00029570D2 | UniProt:M0SF10 | MapMan:15.5.53.3 | : | : | : |
Description
Putative Ninja-family protein AFP1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G15940_001]
Coordinates
chr3:+:16962643..16964984
Molecular Weight (calculated)
38066.1 Da
IEP (calculated)
9.505
GRAVY (calculated)
-0.599
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEAAERER ELPSSVIDRF PRDLLRRLDG NSCFGEQLEV PGRESGEVEL NLGLSLGGCF GTDSKAKKLV RSSSIAAFSS PQREHEFPVM TTALVRTNSL
101: PAETEEERRK RKELQSLKRF EAKRKRLEKR NCIKPDASRS DEDADGRKSL ITPNMINGRL KPLKGKEFRG VFGAATPSEL LAWAAGSKST AASPPVDVTG
201: CLPPIPHGSV RASGSSYGVF EFKRKTPAQA HSDSIRNATS STSTLEVRKP ITVVGEEDSL KNFATDGVNR GRNMVGEMPC VSTRGDGPNG RKIEGFLYKY
301: RKGEEVRIVC VCHGTFLTPA EFVKHAGGGD VSHPLRHIVV NPSPSATSS
101: PAETEEERRK RKELQSLKRF EAKRKRLEKR NCIKPDASRS DEDADGRKSL ITPNMINGRL KPLKGKEFRG VFGAATPSEL LAWAAGSKST AASPPVDVTG
201: CLPPIPHGSV RASGSSYGVF EFKRKTPAQA HSDSIRNATS STSTLEVRKP ITVVGEEDSL KNFATDGVNR GRNMVGEMPC VSTRGDGPNG RKIEGFLYKY
301: RKGEEVRIVC VCHGTFLTPA EFVKHAGGGD VSHPLRHIVV NPSPSATSS
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.