Factsheet for GSMUA_Achr5P01470_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P22710_001
GSMUA_Achr4P32830_001
GSMUA_Achr5P01470_001
GSMUA_Achr6P34980_001
GSMUA_Achr8P07740_001
GSMUA_Achr9P09330_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13740.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT1G13740.1	GSMUA_Achr4P32830_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT1G69260.1	18484180
AT1G13740.1	GSMUA_Achr4P32830_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT3G02140.1	18484180
AT1G13740.1	GSMUA_Achr4P32830_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr5P01470_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr6P34980_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr9P09330_001	AT3G29575.1	18484180
AT1G13740.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT1G13740.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180
AT1G69260.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT1G69260.1	GSMUA_Achr4P32830_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr5P01470_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr6P34980_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr9P09330_001	AT3G02140.1	18484180
AT1G69260.1	GSMUA_Achr4P32830_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr5P01470_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr6P34980_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr9P09330_001	AT3G29575.1	18484180
AT1G69260.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT1G69260.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180
AT3G02140.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT3G02140.1	GSMUA_Achr4P32830_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr5P01470_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr6P34980_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr9P09330_001	AT1G69260.1	18484180
AT3G02140.1	GSMUA_Achr4P32830_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr5P01470_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr6P34980_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr9P09330_001	AT3G02140.1	18484180
AT3G02140.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT3G02140.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180
AT3G29575.1	GSMUA_Achr4P32830_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr5P01470_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr6P34980_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr9P09330_001	AT1G13740.1	18484180
AT3G29575.1	GSMUA_Achr4P32830_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr5P01470_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr6P34980_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr9P09330_001	AT1G69260.1	18484180
AT3G29575.1	GSMUA_Achr4P32830_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr5P01470_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr6P34980_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr9P09330_001	AT3G29575.1	18484180
AT3G29575.1	GSMUA_Achr3P22710_001	AT3G44460.1	18484180
AT3G29575.1	GSMUA_Achr8P07740_001	AT3G44460.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g066850.1.1	Tomato	cytosol	15.33	66.67
GSMUA_Achr4P32830_001	Banana	nucleus	27.53	58.09
Solyc06g083290.1.1	Tomato	cytosol, extracellular, plastid	12.2	51.47
Bra027018.1-P	Field mustard	cytosol	9.76	47.46
Bra036210.1-P	Field mustard	nucleus	35.19	39.61
CDY19988	Canola	nucleus	35.19	39.61
CDY00093	Canola	nucleus	34.49	38.98
PGSC0003DMT400036544	Potato	cytosol	17.07	38.58
AT3G29575.1	Thale cress	nucleus	31.01	38.53
GSMUA_Achr9P09330_001	Banana	nucleus	44.6	37.87
GSMUA_Achr6P34980_001	Banana	cytosol	36.93	37.46
CDY04085	Canola	nucleus	32.4	37.35
CDY44386	Canola	nucleus	32.4	37.05
Solyc02g032680.1.1	Tomato	cytosol	14.98	35.83
CDX85274	Canola	nucleus	32.4	35.09
GSMUA_Achr4P14370_001	Banana	nucleus	40.77	34.93
CDX86364	Canola	nucleus	32.06	34.46
Bra025400.1-P	Field mustard	nucleus	32.06	34.46
GSMUA_Achr3P15940_001	Banana	nucleus	41.81	34.38
GSMUA_Achr3P30390_001	Banana	nucleus	39.37	34.14
Solyc02g032710.1.1	Tomato	cytosol	15.68	33.33
GSMUA_Achr7P26660_001	Banana	nucleus	40.42	32.86
GSMUA_Achr6P27430_001	Banana	nucleus	40.07	32.39
Solyc02g066860.1.1	Tomato	cytosol	14.63	32.31
Solyc02g032140.1.1	Tomato	cytosol	13.94	32.26
VIT_01s0011g00410.t01	Wine grape	nucleus	40.07	31.94
Solyc02g088910.2.1	Tomato	nucleus	35.19	31.86
Solyc02g066870.1.1	Tomato	cytosol	17.07	31.21
Bra026891.1-P	Field mustard	nucleus	33.45	31.07
CDY33807	Canola	nucleus	33.45	31.07
PGSC0003DMT400089614	Potato	cytosol	14.63	30.88
CDY16104	Canola	nucleus	33.1	30.74
PGSC0003DMT400003712	Potato	nucleus	33.45	30.57
Bra033105.1-P	Field mustard	nucleus	23.0	30.28
Solyc02g030650.1.1	Tomato	nucleus	18.82	30.0
CDY36406	Canola	nucleus	29.27	28.77
Bra019706.1-P	Field mustard	nucleus	31.36	28.48
AT1G13740.1	Thale cress	nucleus	34.15	28.16
CDX98125	Canola	nucleus	31.01	27.9
AT1G69260.1	Thale cress	nucleus	33.45	27.83
PGSC0003DMT400095238	Potato	cytosol, mitochondrion	12.2	27.56
CDX74273	Canola	mitochondrion	26.13	27.47
CDY04272	Canola	nucleus	33.1	27.46
CDY68672	Canola	cytosol, mitochondrion, nucleus, plastid	26.13	27.17
Bra004004.1-P	Field mustard	nucleus	32.75	27.17
VIT_14s0068g00300.t01	Wine grape	nucleus	36.59	27.13
CDY07354	Canola	nucleus	32.75	27.09
Solyc02g030610.1.1	Tomato	cytosol	14.98	26.88
GSMUA_Achr9P07070_001	Banana	mitochondrion	39.72	26.76
Bra039157.1-P	Field mustard	cytosol	25.78	26.71
KRH01286	Soybean	nucleus	34.84	26.53
KRH70923	Soybean	nucleus	37.98	26.52
Bra001031.1-P	Field mustard	mitochondrion	25.09	26.37
KRH75067	Soybean	nucleus	37.28	26.29
PGSC0003DMT400045906	Potato	nucleus	35.54	26.29
Bra004368.1-P	Field mustard	nucleus	29.62	26.07
CDY43256	Canola	mitochondrion	25.44	26.07
CDX95951	Canola	nucleus	29.97	25.6
KRH54707	Soybean	nucleus	21.95	25.3
CDX91976	Canola	mitochondrion	25.09	25.26
Solyc04g005380.2.1	Tomato	nucleus	33.8	25.26
KRH45047	Soybean	nucleus	33.45	25.07
Solyc02g032690.1.1	Tomato	cytosol	20.56	24.58
CDY40905	Canola	nucleus	29.27	24.07
PGSC0003DMT400072760	Potato	nucleus	33.45	23.36
Solyc02g032670.1.1	Tomato	cytosol	21.25	23.28
KRH63223	Soybean	nucleus	20.91	23.08
AT3G07255.1	Thale cress	nucleus	23.34	22.87
Solyc01g058740.2.1	Tomato	cytosol	5.57	22.54
CDX74054	Canola	nucleus	22.3	22.22
Bra001242.1-P	Field mustard	nucleus	22.3	22.22
CDY08008	Canola	cytosol	21.95	21.95
CDY34910	Canola	peroxisome	21.25	21.86
Bra040367.1-P	Field mustard	nucleus	21.25	21.86
Solyc02g030620.1.1	Tomato	cytosol	22.3	21.62
Solyc05g012210.2.1	Tomato	extracellular, golgi	34.49	21.38
Solyc02g030630.1.1	Tomato	cytosol	21.95	20.59
KRH66123	Soybean	nucleus	25.09	20.34
PGSC0003DMT400051959	Potato	nucleus	18.12	20.23
Solyc02g066900.1.1	Tomato	cytosol	22.3	20.19
KRH07456	Soybean	nucleus	24.04	19.71
KRH56804	Soybean	nucleus	19.16	19.5
AT3G02140.1	Thale cress	cytosol	21.25	19.12
KRH03141	Soybean	nucleus	15.33	18.72
Solyc02g066890.1.1	Tomato	cytosol	23.34	18.66
VIT_00s0216g00060.t01	Wine grape	nucleus	21.95	17.6
Solyc02g032720.1.1	Tomato	cytosol	22.3	17.3
VIT_17s0000g05280.t01	Wine grape	nucleus	22.3	14.99
Solyc02g066840.1.1	Tomato	cytosol	7.32	14.0
PGSC0003DMT400091590	Potato	cytosol	19.86	13.97
PGSC0003DMT400036545	Potato	nucleus	22.65	13.29
Solyc02g030600.1.1	Tomato	cytosol	7.67	10.53

Protein Annotations

EnsemblPlants:GSMUA_Achr5P01470_001	EnsemblPlants:GSMUA_Achr5T01470_001	EnsemblPlantsGene:GSMUA_Achr5G01470_001	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:Jas	InterPro:NINJA_B	InterPro:Ninja_fam	ncoils:Coil	PANTHER:PTHR31413
PANTHER:PTHR31413:SF6	PFAM:PF16135	PFAM:PF16136	SEG:seg	UniParc:UPI000295DB8F	UniProt:M0SUS6
MapMan:15.5.53.3	:	:	:	:	:

Description

Putative Ninja-family protein AFP2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G01470_001]

Coordinates

chr5:+:845236..846714

Molecular Weight (calculated)

31147.2 Da

IEP (calculated)

8.340

GRAVY (calculated)

-0.672

Length

287 amino acids

Sequence
(BLAST)

001: MEEEVAARVT CCPRDFLRRF GGGGREELAE AKMGELSEAE LSLGLSLGGC SGMEPEERKR KELQSLKRLE AKRKRSEKRR SKAGTTDGKD EILEEEMGHP
101: AVGGATDGVV PPLPPTLARK ARAQMVDVTP ETQVSVGSQG SGCSGCVSDF DCPPKHGFGV AGKNHHRDVR SQSAMNPTTS LIRKRVTFGE EEDDRPRKSA
201: GHGTAKGVTR DMMREMPCVS TRGDGPSGRR IEGFLYKYRE GEEVRIVCLC HGRFLTPAEF VKHGGGGDVA HPLRHIVVNP SPSALLQ

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.