Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026891.1-P | Field mustard | nucleus | 97.41 | 97.41 |
| CDY33807 | Canola | nucleus | 97.09 | 97.09 |
| CDY36406 | Canola | nucleus | 55.99 | 59.25 |
| CDX98125 | Canola | nucleus | 60.52 | 58.62 |
| AT1G13740.1 | Thale cress | nucleus | 63.43 | 56.32 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 21.36 | 48.53 |
| CDY00093 | Canola | nucleus | 39.16 | 47.64 |
| CDY19988 | Canola | nucleus | 38.51 | 46.67 |
| CDY44386 | Canola | nucleus | 37.22 | 45.82 |
| CDY04085 | Canola | nucleus | 35.92 | 44.58 |
| CDX85274 | Canola | nucleus | 37.86 | 44.15 |
| CDX86364 | Canola | nucleus | 37.86 | 43.82 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 44.98 | 38.61 |
| CDY04272 | Canola | nucleus | 42.72 | 38.15 |
| CDY07354 | Canola | nucleus | 41.75 | 37.18 |
| CDX95951 | Canola | nucleus | 39.81 | 36.61 |
| KRH70923 | Soybean | nucleus | 47.57 | 35.77 |
| KRH75067 | Soybean | nucleus | 46.93 | 35.63 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 37.54 | 34.32 |
| HORVU4Hr1G035770.1 | Barley | plastid | 12.3 | 34.23 |
| PGSC0003DMT400045906 | Potato | nucleus | 42.72 | 34.02 |
| Solyc04g005380.2.1 | Tomato | nucleus | 41.42 | 33.33 |
| PGSC0003DMT400072760 | Potato | nucleus | 44.34 | 33.33 |
| CDY40905 | Canola | nucleus | 37.54 | 33.24 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 30.74 | 33.1 |
| CDX74273 | Canola | mitochondrion | 28.8 | 32.6 |
| CDX91976 | Canola | mitochondrion | 29.13 | 31.58 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 26.86 | 30.07 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 27.51 | 30.04 |
| CDY43256 | Canola | mitochondrion | 26.54 | 29.29 |
| Os03t0214200-01 | Rice | nucleus | 37.86 | 29.18 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 43.37 | 28.94 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 21.04 | 28.76 |
| EER92642 | Sorghum | nucleus | 36.57 | 28.68 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 15.53 | 28.24 |
| Zm00001d048085_P002 | Maize | nucleus | 35.28 | 27.74 |
| EER89528 | Sorghum | nucleus | 31.72 | 27.45 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 21.04 | 26.42 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 32.69 | 25.51 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 20.71 | 25.5 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 19.42 | 24.79 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 31.07 | 24.24 |
| CDY34910 | Canola | peroxisome | 21.68 | 24.01 |
| CDX74054 | Canola | nucleus | 22.01 | 23.61 |
| CDY08008 | Canola | cytosol | 21.36 | 23.0 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 29.77 | 22.77 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 33.33 | 20.16 |
Protein Annotations
| EnsemblPlants:CDY16104 | EnsemblPlantsGene:GSBRNA2T00090522001 | GO:A0A078FT63 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil |
| PANTHER:PTHR31413 | PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY16104 |
| ProteinID:CDY16104.1 | SEG:seg | UniParc:UPI0004EF25D5 | UniProt:A0A078FT63 | MapMan:15.5.53.3 | : |
Description
BnaC08g40190DBnaC08g40190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FT63]
Coordinates
chrLK032060:+:666588..667582
Molecular Weight (calculated)
34062.8 Da
IEP (calculated)
7.756
GRAVY (calculated)
-0.791
Length
309 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEAREWNR GTNLSLDMNK FPRDLLRGFM SENVDGRDET SDCEDETAVE LNLGLSLGGR FGVDKAPRKL KRSSSVLSTM PFESSIVADK EAVEPENYTV
101: GLARTTSLPA EMEEEWRKRK EMQSLRRMEA KRRRCEKQSS QTASFESERW VNASKSGFLQ RHLVSPRQVC VDSHGGGGSS SSLSELDNKN RQQGSSNSCG
201: DQISPKIVTR CSSNNSESHG NENENAKGKG TASSTGLFDM PCVFTKGHGP NGRRVDGILY KYGKGEEVRI MCICHGSFLT PAEFVKHGGG GDVDRPLRHI
301: VVNTSPSTF
101: GLARTTSLPA EMEEEWRKRK EMQSLRRMEA KRRRCEKQSS QTASFESERW VNASKSGFLQ RHLVSPRQVC VDSHGGGGSS SSLSELDNKN RQQGSSNSCG
201: DQISPKIVTR CSSNNSESHG NENENAKGKG TASSTGLFDM PCVFTKGHGP NGRRVDGILY KYGKGEEVRI MCICHGSFLT PAEFVKHGGG GDVDRPLRHI
301: VVNTSPSTF
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.