Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07354 | Canola | nucleus | 86.71 | 86.46 |
| AT1G69260.1 | Thale cress | nucleus | 59.83 | 60.0 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 19.08 | 48.53 |
| CDY40905 | Canola | nucleus | 47.69 | 47.28 |
| CDX95951 | Canola | nucleus | 44.22 | 45.54 |
| CDY19988 | Canola | nucleus | 33.53 | 45.49 |
| CDY00093 | Canola | nucleus | 33.24 | 45.28 |
| CDX85274 | Canola | nucleus | 33.24 | 43.4 |
| CDY44386 | Canola | nucleus | 31.21 | 43.03 |
| CDY16104 | Canola | nucleus | 38.15 | 42.72 |
| CDY33807 | Canola | nucleus | 38.15 | 42.72 |
| CDY04085 | Canola | nucleus | 30.64 | 42.57 |
| CDX86364 | Canola | nucleus | 32.37 | 41.95 |
| CDY36406 | Canola | nucleus | 34.97 | 41.44 |
| CDX98125 | Canola | nucleus | 37.86 | 41.07 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 41.33 | 39.72 |
| HORVU4Hr1G035770.1 | Barley | plastid | 11.85 | 36.94 |
| PGSC0003DMT400072760 | Potato | nucleus | 43.64 | 36.74 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 34.68 | 35.5 |
| PGSC0003DMT400045906 | Potato | nucleus | 39.31 | 35.05 |
| KRH75067 | Soybean | nucleus | 40.75 | 34.64 |
| KRH70923 | Soybean | nucleus | 41.04 | 34.55 |
| Solyc04g005380.2.1 | Tomato | nucleus | 37.57 | 33.85 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 27.46 | 33.1 |
| CDX74273 | Canola | mitochondrion | 26.01 | 32.97 |
| CDX91976 | Canola | mitochondrion | 26.01 | 31.58 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 25.72 | 31.45 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 24.28 | 30.43 |
| CDY43256 | Canola | mitochondrion | 23.99 | 29.64 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 39.31 | 29.37 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 14.16 | 28.82 |
| Os03t0214200-01 | Rice | nucleus | 33.24 | 28.68 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 19.36 | 27.24 |
| Zm00001d048085_P002 | Maize | nucleus | 30.64 | 26.97 |
| EER92642 | Sorghum | nucleus | 30.64 | 26.9 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 18.79 | 26.86 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 17.34 | 26.55 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 19.08 | 26.29 |
| EER89528 | Sorghum | nucleus | 26.88 | 26.05 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 28.9 | 25.25 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 29.48 | 25.25 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 28.61 | 25.0 |
| CDY34910 | Canola | peroxisome | 19.94 | 24.73 |
| CDX74054 | Canola | nucleus | 19.65 | 23.61 |
| CDY08008 | Canola | cytosol | 19.36 | 23.34 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 29.77 | 20.16 |
Protein Annotations
| EnsemblPlants:CDY04272 | EnsemblPlantsGene:GSBRNA2T00118021001 | GO:A0A078ETB5 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY04272 | ProteinID:CDY04272.1 |
| SEG:seg | UniParc:UPI0004EE7B44 | MapMan:15.5.53.3 | : | : | : |
Description
BnaC06g25430D
Coordinates
chrLK031950:+:847049..848457
Molecular Weight (calculated)
37425.7 Da
IEP (calculated)
9.265
GRAVY (calculated)
-0.857
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEANKTSTE IARSNSCVFP RDLLQRFISN SAEGEDGDHE EEDDEEIELN LGLSLGGRFG VDKSNKLVRS SSVVVTMPLF REAHQPETTK PAETAVARPR
101: HTGLTRTTSL PAESEEEWRK RKEMQTLRRM AAKRRRSEKL RTGGGNSTKS SEANNNPGEA ATTSRRRGRP SSGLPRWSAT ANSGGLLRQH SAGHESLQGP
201: LESQGGGGGG GGVGSSSSVS ELETKSHQAS SEEARSLPST QQQQEAIAKP KTRLRRLSSV DMKIEPPQGK GKNEMPCVFT KGDGPNGKRV DGILYRYGNG
301: EEVRIMCVCH GDFLSPADFV KHAGGPHVDH PLRHIVVNTS SPSNLL
101: HTGLTRTTSL PAESEEEWRK RKEMQTLRRM AAKRRRSEKL RTGGGNSTKS SEANNNPGEA ATTSRRRGRP SSGLPRWSAT ANSGGLLRQH SAGHESLQGP
201: LESQGGGGGG GGVGSSSSVS ELETKSHQAS SEEARSLPST QQQQEAIAKP KTRLRRLSSV DMKIEPPQGK GKNEMPCVFT KGDGPNGKRV DGILYRYGNG
301: EEVRIMCVCH GDFLSPADFV KHAGGPHVDH PLRHIVVNTS SPSNLL
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.