Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX98125 | Canola | nucleus | 72.6 | 66.46 |
| CDY33807 | Canola | nucleus | 59.25 | 55.99 |
| CDY16104 | Canola | nucleus | 59.25 | 55.99 |
| AT1G13740.1 | Thale cress | nucleus | 57.53 | 48.28 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 21.92 | 47.06 |
| CDY00093 | Canola | nucleus | 37.33 | 42.91 |
| CDY19988 | Canola | nucleus | 37.33 | 42.75 |
| CDY44386 | Canola | nucleus | 35.96 | 41.83 |
| CDY04085 | Canola | nucleus | 34.93 | 40.96 |
| CDX86364 | Canola | nucleus | 36.64 | 40.07 |
| CDX85274 | Canola | nucleus | 35.96 | 39.62 |
| CDY04272 | Canola | nucleus | 41.44 | 34.97 |
| CDX95951 | Canola | nucleus | 39.38 | 34.23 |
| CDY07354 | Canola | nucleus | 40.41 | 34.01 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 41.44 | 33.61 |
| HORVU4Hr1G035770.1 | Barley | plastid | 12.67 | 33.33 |
| KRH70923 | Soybean | nucleus | 45.89 | 32.6 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 37.67 | 32.54 |
| KRH75067 | Soybean | nucleus | 45.21 | 32.43 |
| CDY40905 | Canola | nucleus | 36.3 | 30.37 |
| PGSC0003DMT400045906 | Potato | nucleus | 40.07 | 30.15 |
| Solyc04g005380.2.1 | Tomato | nucleus | 39.04 | 29.69 |
| CDX74273 | Canola | mitochondrion | 27.74 | 29.67 |
| PGSC0003DMT400072760 | Potato | nucleus | 41.44 | 29.44 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 28.42 | 29.33 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 28.77 | 29.27 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.05 | 28.62 |
| EER92642 | Sorghum | nucleus | 38.01 | 28.17 |
| CDX91976 | Canola | mitochondrion | 27.4 | 28.07 |
| CDY43256 | Canola | mitochondrion | 26.37 | 27.5 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 15.75 | 27.06 |
| Zm00001d048085_P002 | Maize | nucleus | 36.3 | 26.97 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 20.21 | 26.11 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 21.92 | 26.02 |
| Os03t0214200-01 | Rice | nucleus | 35.62 | 25.94 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 21.23 | 25.62 |
| EER89528 | Sorghum | nucleus | 31.16 | 25.49 |
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 39.73 | 25.05 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 21.23 | 24.7 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 31.51 | 23.23 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 30.82 | 22.73 |
| CDX74054 | Canola | nucleus | 22.26 | 22.57 |
| CDY08008 | Canola | cytosol | 21.58 | 21.95 |
| CDY34910 | Canola | peroxisome | 20.55 | 21.51 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 28.77 | 20.79 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 31.16 | 17.81 |
Protein Annotations
| EnsemblPlants:CDY36406 | EnsemblPlantsGene:GSBRNA2T00062019001 | GO:A0A078HF43 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009987 | InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | ProteinID:CDY36406 | ProteinID:CDY36406.1 |
| SEG:seg | UniParc:UPI0004EE4AEA | UniProt:A0A078HF43 | MapMan:15.5.53.3 | : | : |
Description
BnaC05g10070DBnaC05g10070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HF43]
Coordinates
chrLK032375:+:145715..147070
Molecular Weight (calculated)
31705.8 Da
IEP (calculated)
6.179
GRAVY (calculated)
-0.803
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEEASRQQQ RAWNNNRDMT LTTNLSLDIN KHPTDPSENG GETSDCEEDE TAVELNLGLS LGGRFGVDKT PRKLKRSSSV LGAAPFVAEP ENSYAVGLAR
101: TTSLPAEIEE GWRKRKEMQS VRRCEKQSFR AGDEQTSSFE RHLVSCVDSD GGRVGGGSSS SLSELDNKNH QQGSSNSCGE DMSPKIMRRC SSNNSEIHGT
201: EKGEDDGKGK GRVPTSTGLF DMPCVFTKGD GPNGRRVDGI LYKYGKVGEE VRIMCICHGS FLTPAEFVKH GGGGDVDRPL RHIVVNTSPS TF
101: TTSLPAEIEE GWRKRKEMQS VRRCEKQSFR AGDEQTSSFE RHLVSCVDSD GGRVGGGSSS SLSELDNKNH QQGSSNSCGE DMSPKIMRRC SSNNSEIHGT
201: EKGEDDGKGK GRVPTSTGLF DMPCVFTKGD GPNGRRVDGI LYKYGKVGEE VRIMCICHGS FLTPAEFVKH GGGGDVDRPL RHIVVNTSPS TF
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.