Factsheet for VIT_01s0011g00410.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g00410.t01
VIT_06s0080g00340.t01
VIT_14s0068g00300.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13740.1	VIT_01s0011g00410.t01	AT1G13740.1	18484180
AT1G13740.1	VIT_01s0011g00410.t01	AT1G69260.1	18484180
AT1G13740.1	VIT_14s0068g00300.t01	AT3G02140.1	18484180
AT1G13740.1	VIT_14s0068g00300.t01	AT3G29575.1	18484180
AT1G13740.1	VIT_06s0080g00340.t01	AT3G44460.1	18484180
AT1G69260.1	VIT_01s0011g00410.t01	AT1G13740.1	18484180
AT1G69260.1	VIT_14s0068g00300.t01	AT3G02140.1	18484180
AT1G69260.1	VIT_14s0068g00300.t01	AT3G29575.1	18484180
AT1G69260.1	VIT_06s0080g00340.t01	AT3G44460.1	18484180

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P32830_001	Banana	nucleus	20.83	55.15
KRH75067	Soybean	nucleus	52.5	46.44
KRH70923	Soybean	nucleus	51.94	45.5
Bra026891.1-P	Field mustard	nucleus	38.89	45.31
CDY33807	Canola	nucleus	38.89	45.31
CDY16104	Canola	nucleus	38.61	44.98
PGSC0003DMT400045906	Potato	nucleus	47.5	44.07
GSMUA_Achr9P09330_001	Banana	nucleus	40.28	42.9
AT1G69260.1	Thale cress	nucleus	40.83	42.61
Solyc04g005380.2.1	Tomato	nucleus	44.72	41.93
Bra004004.1-P	Field mustard	nucleus	40.0	41.62
CDY36406	Canola	nucleus	33.61	41.44
CDY04272	Canola	nucleus	39.72	41.33
CDY07354	Canola	nucleus	39.72	41.21
Bra019706.1-P	Field mustard	nucleus	36.11	41.14
AT1G13740.1	Thale cress	nucleus	39.44	40.8
CDX98125	Canola	nucleus	36.11	40.75
PGSC0003DMT400072760	Potato	nucleus	46.11	40.39
GSMUA_Achr6P34980_001	Banana	cytosol	31.67	40.28
GSMUA_Achr5P01470_001	Banana	nucleus	31.94	40.07
Bra004368.1-P	Field mustard	nucleus	35.28	38.96
CDX95951	Canola	nucleus	35.56	38.1
CDY40905	Canola	nucleus	36.11	37.25
VIT_14s0068g00300.t01	Wine grape	nucleus	40.0	37.21
HORVU4Hr1G035770.1	Barley	plastid	11.11	36.04
Solyc05g012210.2.1	Tomato	extracellular, golgi	44.44	34.56
TraesCS3D01G532000.1	Wheat	nucleus	14.72	31.18
Os03t0214200-01	Rice	nucleus	32.78	29.43
TraesCS3B01G594200.1	Wheat	cytosol	18.06	28.76
EER92642	Sorghum	nucleus	30.83	28.17
Zm00001d048085_P002	Maize	nucleus	30.28	27.74
EER89528	Sorghum	nucleus	27.5	27.73
TraesCS4B01G246800.1	Wheat	nucleus	18.61	27.69
TraesCS4A01G058100.1	Wheat	nucleus	18.61	27.24
HORVU4Hr1G067930.1	Barley	nucleus	29.72	26.49
TraesCS4D01G246100.2	Wheat	nucleus	18.33	26.29
TraesCS4D01G246400.1	Wheat	nucleus	28.61	26.01
TraesCS4B01G247000.1	Wheat	nucleus	28.33	25.76
VIT_00s0216g00060.t01	Wine grape	nucleus	20.28	20.39
TraesCS4A01G057800.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.89	20.35
VIT_17s0000g05280.t01	Wine grape	nucleus	20.56	17.33

Protein Annotations

EntrezGene:100245623	wikigene:100245623	MapMan:15.5.53.3	ProteinID:CCB51083	ProteinID:CCB51083.1	ncoils:Coil
UniProt:F6HFU9	EMBL:FN595752	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:Jas	EntrezGene:LOC100245623	wikigene:LOC100245623	InterPro:NINJA_B	InterPro:Ninja_fam	InterPro:Ninja_motif
PFAM:PF07897	PFAM:PF16135	PFAM:PF16136	PANTHER:PTHR31413	PANTHER:PTHR31413:SF6	TIGR:TC62923
UniParc:UPI00015C7D42	ArrayExpress:VIT_01s0011g00410	EnsemblPlantsGene:VIT_01s0011g00410	EnsemblPlants:VIT_01s0011g00410.t01	unigene:Vvi.1439	RefSeq:XP_002274025
RefSeq:XP_002274025.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:433726..439562

Molecular Weight (calculated)

39024.8 Da

IEP (calculated)

8.367

GRAVY (calculated)

-0.729

Length

360 amino acids

Sequence
(BLAST)

001: MEHFGLRMEK NPRDLLQRLM GNSGEQSQYA SMVKGEDDPE EIELNLGLSL GGRFGVDKSE KKLMRSSSIA GSIGITRDED ALVTPAVSYS SLMRTSSLPT
101: ETQEEWRKRK ELQTLRRMEA KRRRSEKQRN KEGCVEDEKR DLDSPIVGFR SNIEKAHHYV AANRSAAAFG FPTWAAAAAA AKGKGSGSLQ NFVQQTSQGS
201: GESQGGSSSS MSELESKPLQ GYSSCGEARS LACNQSLQEQ SIQEASGSSR TKPNEGTGRT SGAEMENPSK NPGLSENRGR GSGMNFMGDM PCVFTRGDGP
301: NGRRIEGILY KYGKGEEVRI MCVCHGSFLS PAEFVKHAGG GDVAHPLRHI VVNPSSASFV

Best Arabidopsis Sequence Match ( AT1G13740.1 )
(BLAST)

001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF

Arabidopsis Description

AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.