Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g012210.2.1 | Tomato | extracellular, golgi | 66.18 | 58.75 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 17.03 | 51.47 |
| VIT_01s0011g00410.t01 | Wine grape | nucleus | 40.39 | 46.11 |
| Bra026891.1-P | Field mustard | nucleus | 33.58 | 44.66 |
| CDY33807 | Canola | nucleus | 33.58 | 44.66 |
| CDY16104 | Canola | nucleus | 33.33 | 44.34 |
| CDY04272 | Canola | nucleus | 36.74 | 43.64 |
| PGSC0003DMT400045906 | Potato | nucleus | 41.12 | 43.56 |
| Bra004004.1-P | Field mustard | nucleus | 35.77 | 42.49 |
| CDY07354 | Canola | nucleus | 35.52 | 42.07 |
| CDY36406 | Canola | nucleus | 29.44 | 41.44 |
| AT1G69260.1 | Thale cress | nucleus | 34.31 | 40.87 |
| Bra019706.1-P | Field mustard | nucleus | 31.39 | 40.82 |
| Bra004368.1-P | Field mustard | nucleus | 31.87 | 40.18 |
| PGSC0003DMT400036544 | Potato | cytosol | 12.41 | 40.16 |
| PGSC0003DMT400003712 | Potato | nucleus | 30.66 | 40.13 |
| CDX98125 | Canola | nucleus | 31.14 | 40.13 |
| CDX95951 | Canola | nucleus | 31.87 | 38.99 |
| CDY40905 | Canola | nucleus | 33.09 | 38.97 |
| KRH75067 | Soybean | nucleus | 37.96 | 38.33 |
| KRH70923 | Soybean | nucleus | 38.2 | 38.2 |
| AT1G13740.1 | Thale cress | nucleus | 31.39 | 37.07 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 29.2 | 35.5 |
| HORVU4Hr1G035770.1 | Barley | plastid | 9.25 | 34.23 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 23.36 | 33.45 |
| PGSC0003DMT400089614 | Potato | cytosol | 10.95 | 33.09 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 21.9 | 31.8 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 9.49 | 30.71 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 12.65 | 30.59 |
| Os03t0214200-01 | Rice | nucleus | 29.44 | 30.17 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 16.55 | 30.09 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 17.52 | 29.27 |
| EER89528 | Sorghum | nucleus | 24.57 | 28.29 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 16.3 | 27.69 |
| EER92642 | Sorghum | nucleus | 26.28 | 27.41 |
| Zm00001d048085_P002 | Maize | nucleus | 25.79 | 26.97 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 26.28 | 26.73 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 25.55 | 26.52 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 24.82 | 25.76 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 15.33 | 25.1 |
| PGSC0003DMT400051959 | Potato | nucleus | 14.36 | 22.96 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 26.28 | 21.14 |
| PGSC0003DMT400036545 | Potato | nucleus | 22.38 | 18.81 |
| PGSC0003DMT400091590 | Potato | cytosol | 18.0 | 18.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400072760 | EnsemblPlantsGene:PGSC0003DMG400028315 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:NINJA_B | InterPro:Ninja_fam | InterPro:Ninja_motif | ncoils:Coil | PANTHER:PTHR31413 |
| PANTHER:PTHR31413:SF6 | PFAM:PF07897 | PFAM:PF16135 | PFAM:PF16136 | PGSC:PGSC0003DMG400028315 | SEG:seg |
| UniParc:UPI0002955700 | UniProt:M1CQW8 | MapMan:15.5.53.3 | : | : | : |
Description
Ninja-family protein AFP2 [Source:PGSC_GENE;Acc:PGSC0003DMG400028315]
Coordinates
chr5:-:576145..581172
Molecular Weight (calculated)
43703.6 Da
IEP (calculated)
9.327
GRAVY (calculated)
-0.713
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDNTDEKRK SRIEMENLSM ETNRFSRDLL QRFMGGGGGS SSSSSGKSRV EVVVAGGKEV KEEEDEGEVE LNLGLSLGGR FGVDKSSNSN KLIRSSSVAS
101: CLPIVRDDDA LAPPPVSYPT LVRTSSLPVE TEEEWRKRKE LQTLRRMEAK RRRSEKQRNL RGDKEGGGGS TVVGGGGSME DEKREIEMNL RGRLDKEQYL
201: ASAKRFGLSV SPTLAAVARQ GSLTGGGIDL TMGKGKGSYS GGKMQGHGKL GSQGSVESQG GGSSSSMSEL ESKLPQGSGE LSPASIRSLQ GGGSQDIGLS
301: GSKMRDTGSR MSGGDMDSPS KKLEAATNRA KETGTNTLEN MPCVFTKGDG PNGKRVDGIL YRYNKGEEVR IMCVCHGSFH SPAEFVKHAG GTDVAHPLKH
401: IVINPNASPL L
101: CLPIVRDDDA LAPPPVSYPT LVRTSSLPVE TEEEWRKRKE LQTLRRMEAK RRRSEKQRNL RGDKEGGGGS TVVGGGGSME DEKREIEMNL RGRLDKEQYL
201: ASAKRFGLSV SPTLAAVARQ GSLTGGGIDL TMGKGKGSYS GGKMQGHGKL GSQGSVESQG GGSSSSMSEL ESKLPQGSGE LSPASIRSLQ GGGSQDIGLS
301: GSKMRDTGSR MSGGDMDSPS KKLEAATNRA KETGTNTLEN MPCVFTKGDG PNGKRVDGIL YRYNKGEEVR IMCVCHGSFH SPAEFVKHAG GTDVAHPLKH
401: IVINPNASPL L
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.