Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g032710.1.1 | Tomato | cytosol | 73.53 | 74.07 |
| Solyc02g066870.1.1 | Tomato | cytosol | 75.74 | 65.61 |
| PGSC0003DMT400095238 | Potato | cytosol, mitochondrion | 41.18 | 44.09 |
| PGSC0003DMT400036544 | Potato | cytosol | 35.29 | 37.8 |
| HORVU4Hr1G035770.1 | Barley | plastid | 21.32 | 26.13 |
| GSMUA_Achr4P32830_001 | Banana | nucleus | 25.0 | 25.0 |
| AT3G29575.1 | Thale cress | nucleus | 38.24 | 22.51 |
| CDY04085 | Canola | nucleus | 38.24 | 20.88 |
| CDY44386 | Canola | nucleus | 37.5 | 20.32 |
| TraesCS3D01G532000.1 | Wheat | nucleus | 24.26 | 19.41 |
| CDY00093 | Canola | nucleus | 36.03 | 19.29 |
| CDX85274 | Canola | nucleus | 37.5 | 19.25 |
| Bra036210.1-P | Field mustard | nucleus | 36.03 | 19.22 |
| CDY19988 | Canola | nucleus | 36.03 | 19.22 |
| CDX86364 | Canola | nucleus | 36.76 | 18.73 |
| Bra025400.1-P | Field mustard | nucleus | 36.76 | 18.73 |
| TraesCS3B01G594200.1 | Wheat | cytosol | 27.94 | 16.81 |
| TraesCS4D01G246100.2 | Wheat | nucleus | 30.88 | 16.73 |
| GSMUA_Achr6P34980_001 | Banana | cytosol | 34.56 | 16.61 |
| TraesCS4B01G246800.1 | Wheat | nucleus | 28.68 | 16.12 |
| PGSC0003DMT400003712 | Potato | nucleus | 36.76 | 15.92 |
| Bra033105.1-P | Field mustard | nucleus | 25.0 | 15.6 |
| TraesCS4A01G058100.1 | Wheat | nucleus | 27.94 | 15.45 |
| Bra001031.1-P | Field mustard | mitochondrion | 29.41 | 14.65 |
| CDX74273 | Canola | mitochondrion | 29.41 | 14.65 |
| GSMUA_Achr5P01470_001 | Banana | nucleus | 30.88 | 14.63 |
| GSMUA_Achr9P09330_001 | Banana | nucleus | 35.29 | 14.2 |
| CDY68672 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.68 | 14.13 |
| Bra039157.1-P | Field mustard | cytosol | 28.68 | 14.08 |
| CDX91976 | Canola | mitochondrion | 29.41 | 14.04 |
| PGSC0003DMT400051959 | Potato | nucleus | 25.0 | 13.23 |
| CDY43256 | Canola | mitochondrion | 26.47 | 12.86 |
| AT3G02140.1 | Thale cress | cytosol | 29.41 | 12.54 |
| KRH45047 | Soybean | nucleus | 35.29 | 12.53 |
| KRH01286 | Soybean | nucleus | 33.82 | 12.2 |
| EER89528 | Sorghum | nucleus | 31.62 | 12.04 |
| VIT_14s0068g00300.t01 | Wine grape | nucleus | 33.82 | 11.89 |
| PGSC0003DMT400045906 | Potato | nucleus | 33.82 | 11.86 |
| Os03t0214200-01 | Rice | nucleus | 33.82 | 11.47 |
| EER92642 | Sorghum | nucleus | 33.09 | 11.42 |
| PGSC0003DMT400072760 | Potato | nucleus | 33.09 | 10.95 |
| Zm00001d048085_P002 | Maize | nucleus | 30.88 | 10.69 |
| PGSC0003DMT400036545 | Potato | nucleus | 35.29 | 9.82 |
| HORVU4Hr1G067930.1 | Barley | nucleus | 28.68 | 9.65 |
| TraesCS4B01G247000.1 | Wheat | nucleus | 25.0 | 8.59 |
| TraesCS4D01G246400.1 | Wheat | nucleus | 25.0 | 8.59 |
| PGSC0003DMT400091590 | Potato | cytosol | 22.79 | 7.6 |
| TraesCS4A01G057800.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 25.74 | 6.85 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089614 | EnsemblPlantsGene:PGSC0003DMG400039185 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:Jas | InterPro:Ninja_fam | PANTHER:PTHR31413 | PANTHER:PTHR31413:SF10 | PFAM:PF16135 | PGSC:PGSC0003DMG400039185 |
| UniParc:UPI000294B005 | UniProt:M1DII7 | MapMan:15.5.53.3 | : | : | : |
Description
Ninja-family protein Os07g0602900 [Source:PGSC_GENE;Acc:PGSC0003DMG400039185]
Coordinates
chr2:+:25251637..25252262
Molecular Weight (calculated)
15094.0 Da
IEP (calculated)
6.779
GRAVY (calculated)
-0.599
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKAKENIGT SKNVANENMK LNLELSLNGG SQGCVASSVA EVETQQPPTQ EKNNIATEKF RNFMLNNMAN VFTKGEGPKR KKTEGLLYSF NKRDEVKIVC
101: LCHGNFLNAE EFVEHAGVGD VEDPLEHIII EGKQIK
101: LCHGNFLNAE EFVEHAGVGD VEDPLEHIII EGKQIK
001: MGEASRQQRA WNREMTVTTN LSLDIDKYPR DLLRGFMSEN GGGRVFHGGE TNCDDESTIE LNLGLSLGGR FGVDKTPRKL KRSSSVLDTV PFNDSTVAEP
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
101: ENYTVGLERT TSLPAEMEEE WRKRKEMQSL RRMEAKRRRC EKQSFRVGNS DDQTVSFENE RWVTASKSGF LQRHLVSSNR QVCGVDSDGG GATGGGSSSS
201: LSELDNKNQQ GSSNSCNDER SPKIVAGCSS NSGSQGTERP SVTRANKVNE NENEKRVRSE DSVDRKGKGM ATSTGLVDMP CVFTKGDGPN GRRVDGILYK
301: YGKGEEVRIM CICHGSFLTP AEFVKHGGGG DVDRPLRHIV VNTSSSTF
Arabidopsis Description
AFP2AFP2 [Source:UniProtKB/TrEMBL;Acc:A0A178WBB1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.