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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g058740.2.1
Solyc02g030600.1.1
Solyc02g030610.1.1
Solyc02g030620.1.1
Solyc02g030630.1.1
Solyc02g030650.1.1
Solyc02g032670.1.1
Solyc02g032680.1.1
Solyc02g032690.1.1
Solyc02g032710.1.1
Solyc02g032720.1.1
Solyc02g066840.1.1
Solyc02g066850.1.1
Solyc02g066860.1.1
Solyc02g066870.1.1
Solyc02g066890.1.1
Solyc02g066900.1.1
Solyc02g088910.2.1
Solyc04g005380.2.1
Solyc05g012210.2.1
Solyc09g009490.2.1
Solyc10g076920.1.1
Solyc10g081350.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G02140.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G02140.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G02140.1 Solyc01g058740.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030600.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030610.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030620.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030630.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g030650.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032670.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032680.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032690.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032710.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g032720.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066840.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066850.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066860.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066870.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066890.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g066900.1.1 AT3G02140.1 18484180
AT3G02140.1 Solyc02g088910.2.1 AT3G02140.1 18484180
AT3G02140.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G02140.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G02140.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G13740.1 18484180
AT3G29575.1 Solyc04g005380.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc05g012210.2.1 AT1G69260.1 18484180
AT3G29575.1 Solyc01g058740.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030600.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030610.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030620.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030630.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g030650.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032670.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032680.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032690.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032710.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g032720.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066840.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066850.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066860.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066870.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066890.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g066900.1.1 AT3G29575.1 18484180
AT3G29575.1 Solyc02g088910.2.1 AT3G29575.1 18484180
AT3G29575.1 Solyc09g009490.2.1 AT3G44460.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 18484180
AT3G29575.1 Solyc10g076920.1.1 AT3G56850.1 21798944
AT3G29575.1 Solyc10g081350.1.1 AT3G56850.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc02g066850.1.1 Tomato cytosol 16.16 87.88
Solyc02g066900.1.1 Tomato cytosol 60.72 68.77
Solyc02g066840.1.1 Tomato cytosol 21.17 50.67
Solyc06g083290.1.1 Tomato cytosol, extracellular, plastid 9.47 50.0
Solyc02g030600.1.1 Tomato cytosol 26.18 44.98
Solyc02g032720.1.1 Tomato cytosol 44.01 42.7
Solyc02g030630.1.1 Tomato cytosol 34.54 40.52
GSMUA_Achr4P32830_001 Banana nucleus 14.48 38.24
Solyc02g032680.1.1 Tomato cytosol 12.53 37.5
Solyc02g030650.1.1 Tomato nucleus 18.66 37.22
Solyc02g032670.1.1 Tomato cytosol 26.46 36.26
Solyc02g032690.1.1 Tomato cytosol 24.23 36.25
Solyc02g032710.1.1 Tomato cytosol 13.09 34.81
Solyc02g066860.1.1 Tomato cytosol 11.98 33.08
Solyc02g066870.1.1 Tomato cytosol 14.21 32.48
HORVU4Hr1G035770.1 Barley plastid 10.03 32.43
AT3G29575.1 Thale cress nucleus 20.61 32.03
Solyc02g030620.1.1 Tomato cytosol 25.35 30.74
Bra036210.1-P Field mustard nucleus 20.89 29.41
CDY19988 Canola nucleus 20.89 29.41
CDY00093 Canola nucleus 20.61 29.13
Solyc02g032140.1.1 Tomato cytosol 10.03 29.03
TraesCS3D01G532000.1 Wheat nucleus 13.65 28.82
CDX85274 Canola nucleus 20.89 28.3
CDY44386 Canola nucleus 19.78 28.29
Solyc02g030610.1.1 Tomato cytosol 12.53 28.12
CDY04085 Canola nucleus 19.5 28.11
Bra025400.1-P Field mustard nucleus 20.89 28.09
CDX86364 Canola nucleus 20.89 28.09
Solyc01g058740.2.1 Tomato cytosol 5.01 25.35
Solyc02g088910.2.1 Tomato nucleus 21.73 24.61
TraesCS4B01G246800.1 Wheat nucleus 15.88 23.55
CDX74273 Canola mitochondrion 17.83 23.44
Bra033105.1-P Field mustard nucleus 14.21 23.39
GSMUA_Achr5P01470_001 Banana nucleus 18.66 23.34
Bra039157.1-P Field mustard cytosol 17.83 23.1
TraesCS3B01G594200.1 Wheat cytosol 14.48 23.01
CDY68672 Canola cytosol, mitochondrion, nucleus, plastid 17.55 22.83
CDX91976 Canola mitochondrion 18.11 22.81
Bra001031.1-P Field mustard mitochondrion 17.27 22.71
GSMUA_Achr9P09330_001 Banana nucleus 21.17 22.49
KRH45047 Soybean nucleus 23.68 22.19
KRH01286 Soybean nucleus 23.12 22.02
TraesCS4D01G246100.2 Wheat nucleus 15.04 21.51
GSMUA_Achr6P34980_001 Banana cytosol 16.71 21.2
VIT_14s0068g00300.t01 Wine grape nucleus 22.84 21.19
TraesCS4A01G058100.1 Wheat nucleus 14.21 20.73
CDY43256 Canola mitochondrion 16.16 20.71
Os03t0214200-01 Rice nucleus 22.28 19.95
AT3G02140.1 Thale cress cytosol 17.55 19.75
Solyc04g005380.2.1 Tomato nucleus 20.89 19.53
EER89528 Sorghum nucleus 19.22 19.33
EER92642 Sorghum nucleus 20.89 19.04
Zm00001d048085_P002 Maize nucleus 19.22 17.56
TraesCS4B01G247000.1 Wheat nucleus 19.22 17.42
TraesCS4D01G246400.1 Wheat nucleus 19.22 17.42
HORVU4Hr1G067930.1 Barley nucleus 18.94 16.83
Solyc05g012210.2.1 Tomato extracellular, golgi 20.61 15.98
TraesCS4A01G057800.1 Wheat cytosol, mitochondrion, nucleus, plastid 19.5 13.7
Protein Annotations
EnsemblPlants:Solyc02g066890.1.1EnsemblPlantsGene:Solyc02g066890.1GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009987
InterPro:JasInterPro:Ninja_famPANTHER:PTHR31413PANTHER:PTHR31413:SF10PFAM:PF16135SEG:seg
UniParc:UPI0002768FEAUniProt:K4B721MapMan:15.5.53.3:::
Description
No Description!
Coordinates
chr2:+:37099714..37100906
Molecular Weight (calculated)
40920.5 Da
IEP (calculated)
6.695
GRAVY (calculated)
-0.828
Length
359 amino acids
Sequence
(BLAST)
001: MEKANHQDKG KKIVEDVSVD LKLDLPMETQ MEYWRQRNLL PPMDTEMEWR QQNYPFSLTR TSSLPRDIEI EWRKRLEAEM AWRRRMDTEI ESRNRLEAEM
101: DWRRRMETEI ECRRRMETDT EWRQISGPFS VTRAASMPPM ETQTEWGKMS DPFYVNRKAS LPPMETGMDL KERRDLQTQT RGDTQQNRWD KLKNVIVVEE
201: NEGNGTSSLP SPSGSGSVGS FGLARTSSQT QQHLPNQVDG TFIEGASGSS NAIPLVSGTL EQMQHLVLAA IEATNEQSPN FSTKEGLRKF LLKMPGVSTK
301: GDGPNGKKTE GFLYAYKRGG EVKIVCICHG YFLSPAKFVK HAGGGDVENP LRLINVDPN
Best Arabidopsis Sequence Match ( AT1G69260.1 )
(BLAST)
001: MAEANERSKE MARSNSCVFP RDLLQRFISN SVEGEDDDEE EDDDEIELNL GLSLGGRFGV DKSNKLVRSS SVVVTMPLFR EDHHHHQAAA MITTKVSTET
101: VAGATRGTGL MRTTSLPAES EEEWRKRKEM QTLRRMAAKR RRSEKLRTGV GGGNSNNPEE AATATASRRR GRPSSGLPRW SATANKSGLL RQHSAGLDSL
201: QVSGESLGGG RAAGSSSSVS ELETKASSDE ARSLPSTTQP QQETTTKPTN RLRRLSSVDM NMKMEPQGKG KSEMPCVFTK GDGPNGKRVD GILYRYGSGE
301: EVRIMCVCHG DFLSPADFVK HAGGPHVDHP LRHIVVNTSS PSNLL
Arabidopsis Description
AFP1Ninja-family protein AFP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ98]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.