Factsheet for Bra015281.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89852	Canola	nucleus, plastid	99.63	99.63
CDY18197	Canola	nucleus, plastid	96.64	96.28
AT1G03970.1	Thale cress	nucleus, plastid	74.63	74.07
Bra033719.1-P	Field mustard	nucleus, plastid	54.85	55.26
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	45.52	44.36
KRH35126	Soybean	nucleus	39.18	42.51
Solyc04g071510.2.1	Tomato	nucleus, plastid	43.66	37.99
GSMUA_Achr9P08900_001	Banana	nucleus	35.07	37.9
TraesCS3D01G371900.1	Wheat	nucleus	35.07	37.6
TraesCS3B01G411300.1	Wheat	nucleus	34.7	37.2
HORVU3Hr1G083250.2	Barley	nucleus	30.6	37.1
TraesCS3A01G378700.1	Wheat	nucleus	35.45	36.97
GSMUA_Achr3P22470_001	Banana	nucleus	35.07	36.72
EES03943	Sorghum	nucleus	33.96	34.73
GSMUA_Achr2P20490_001	Banana	nucleus	31.34	34.57
Zm00001d042721_P001	Maize	nucleus	32.84	33.85
GSMUA_Achr10P...	Banana	nucleus	32.46	32.58
TraesCS1D01G273100.1	Wheat	nucleus	30.6	32.54
TraesCS1B01G282800.1	Wheat	nucleus	30.6	32.54
TraesCS1A01G273000.1	Wheat	nucleus	30.6	32.41
Os01t0867300-01	Rice	nucleus	31.72	31.95
Zm00001d038311_P001	Maize	nucleus	27.99	29.53
EES18296	Sorghum	nucleus, plastid	29.1	29.21
Os05t0437700-01	Rice	plastid	26.87	29.15
Zm00001d012273_P001	Maize	plastid	26.49	29.1
HORVU1Hr1G074960.8	Barley	mitochondrion, nucleus, plastid	26.49	28.29
Bra014668.1-P	Field mustard	nucleus	21.64	25.33
Bra016953.1-P	Field mustard	nucleus	23.13	23.22
Bra007274.1-P	Field mustard	nucleus	23.88	22.7
Bra007276.1-P	Field mustard	nucleus	23.88	22.7
Bra004597.1-P	Field mustard	nucleus	22.39	21.35
Bra022409.1-P	Field mustard	nucleus	23.13	17.51
Bra017251.1-P	Field mustard	nucleus	25.75	17.42
Bra019436.1-P	Field mustard	nucleus	21.27	16.96
Bra001742.1-P	Field mustard	nucleus	22.39	16.9
Bra018800.1-P	Field mustard	nucleus	23.13	16.85
Bra003253.1-P	Field mustard	plastid	24.25	16.13
Bra005287.1-P	Field mustard	nucleus	26.12	15.98
Bra037533.1-P	Field mustard	nucleus	23.13	15.98
Bra040260.1-P	Field mustard	nucleus	21.64	15.93
Bra011485.1-P	Field mustard	nucleus	23.51	14.35
Bra033649.1-P	Field mustard	nucleus	22.01	14.25
Bra017621.1-P	Field mustard	cytosol	10.45	9.4

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra015281	EnsemblPlants:Bra015281.1	EnsemblPlants:Bra015281.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR004827	InterPro:Leuzip_CREB
UniProt:M4DFK8	PFAM:PF00170	PRINTS:PR00041	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952
PANTHER:PTHR22952:SF184	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI000254427A	InterPro:bZIP	SEG:seg

Description

AT1G03970 (E=4e-078) GBF4 | GBF4; DNA binding / sequence-specific DNA binding / transcription factor

Coordinates

chrA10:-:2723568..2724374

Molecular Weight (calculated)

30516.5 Da

IEP (calculated)

6.705

GRAVY (calculated)

-1.070

Length

268 amino acids

Sequence
(BLAST)

001: MASFKMMSSS TSRNSDLSRR NSSSASSSPT VRSNHLRRDP HADHSRISFG YGGGNDATLH DYNFASDSLD VDRSNGDRNS VNGGGRKSVD DVWKEIVSGE
101: KKTVMKEEAQ DEYMMTLEDF LAQAAEMDGN DDEIDVKIPM SLSGTFDYPM MPQQNNQVEM VEGSTRRKRG RVMVEAMDKA AAQRQKRMIK NRESAARSRE
201: RKQAYQVELE TLAAKLEREN EQLLKEIEEK TRERYKNLME QLIPVDDEKR KPSSSSSRSL SRSHSLEW

Best Arabidopsis Sequence Match ( AT1G03970.1 )
(BLAST)

001: MASFKLMSSS NSDLSRRNSS SASSSPSIRS SHHLRPNPHA DHSRISFAYG GGVNDYTFAS DSKPFEMAID VDRSIGDRNS VNNGKSVDDV WKEIVSGEQK
101: TIMMKEEEPE DIMTLEDFLA KAEMDEGASD EIDVKIPTER LNNDGSYTFD FPMQRHSSFQ MVEGSMGGGV TRGKRGRVMM EAMDKAAAQR QKRMIKNRES
201: AARSRERKQA YQVELETLAA KLEEENEQLL KEIEESTKER YKKLMEVLIP VDEKPRPPSR PLSRSHSLEW

Arabidopsis Description

GBF4G-box-binding factor 4 [Source:UniProtKB/Swiss-Prot;Acc:P42777]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.