CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g01150.t01	Wine grape	nucleus	16.39	70.18
TraesCS4D01G177700.1	Wheat	nucleus	59.02	64.57
TraesCS4A01G128900.1	Wheat	nucleus	59.43	64.44
TraesCS4B01G175800.1	Wheat	nucleus	59.43	64.44
Os03t0322700-00	Rice	nucleus	56.97	56.97
GSMUA_Achr8P21560_001	Banana	nucleus	41.39	42.44
VIT_12s0034g00110.t01	Wine grape	nucleus	16.8	41.41
GSMUA_Achr6P15970_001	Banana	nucleus	32.38	40.72
GSMUA_Achr10P...	Banana	nucleus	38.11	39.74
OQU90534	Sorghum	nucleus	49.18	37.74
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	30.74	37.13
VIT_13s0175g00120.t01	Wine grape	nucleus	47.13	35.38
KRH44714	Soybean	nucleus	45.49	34.37
EES18419	Sorghum	nucleus	45.49	34.26
KRH13203	Soybean	nucleus	42.21	34.11
KRH56272	Soybean	nucleus	43.44	33.54
EES03785	Sorghum	nucleus	45.49	33.33
KRH62689	Soybean	nucleus	43.03	33.23
EES03943	Sorghum	nucleus	29.51	27.48
EES18296	Sorghum	nucleus, plastid	28.69	26.22
OQU78764	Sorghum	nucleus	30.33	23.72
Solyc01g009510.1.1	Tomato	nucleus	18.44	23.68
KXG26981	Sorghum	nucleus	15.98	23.64
KXG19586	Sorghum	nucleus	31.97	22.41
EER96850	Sorghum	nucleus	32.79	21.86
OQU80633	Sorghum	nucleus	34.02	21.73
EES07580	Sorghum	nucleus	29.51	20.81
KXG33733	Sorghum	nucleus	34.43	20.44

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	UniProt:A0A1B6QNJ1	ncoils:Coil	GO:GO:0003674	GO:GO:0003700
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR004827	EnsemblPlants:KXG39483	ProteinID:KXG39483	ProteinID:KXG39483.1	ProteinID:OQU92681.1	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF211	SMART:SM00338	EnsemblPlantsGene:SORBI_3001G388300
SUPFAM:SSF57959	UniParc:UPI0003C67D6B	InterPro:bZIP	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:67536978..67540503

Molecular Weight (calculated)

26011.5 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.722

Length

244 amino acids

Sequence
(BLAST)

001: MGAEAMSSHG SRVGGGGGAL SRQGSVCSLT FSEVEGQLHG VNLDDLLRSG RKTADEVWRD IQGAAAAAAA CPRAQMTLED FLSRGGGPPA DAAADTDTGS
101: GARGWAQQLY QPAPAPAPLE LGRHHPAVGR PVPRPLGAGA GPVLDALYHD GQDAVAGAKR VAGEGGVAER SNERRKKRMI KNRESAARSR ARKQAYTNEL
201: ENKISQLEEE NERLRRHKAP EPVVQYVPQQ ELKNRLRRAN SANF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.