CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62689	Soybean	nucleus	93.67	93.67
VIT_04s0069g01150.t01	Wine grape	nucleus	13.61	75.44
KRH44714	Soybean	nucleus	72.78	71.21
KRH13203	Soybean	nucleus	68.04	71.19
GSMUA_AchrUn_...	Banana	nucleus	51.58	59.49
GSMUA_Achr11P...	Banana	nucleus	44.94	58.44
GSMUA_Achr8P21560_001	Banana	nucleus	42.41	56.3
KRG94206	Soybean	nucleus	56.96	56.07
GSMUA_Achr10P...	Banana	mitochondrion, nucleus	35.44	55.45
KRG89815	Soybean	nucleus	47.78	55.11
KRH57716	Soybean	nucleus	55.38	53.68
KRG94991	Soybean	nucleus	52.85	52.19
KRH64894	Soybean	nucleus	51.9	51.9
KRH18666	Soybean	nucleus	45.57	51.8
HORVU2Hr1G017020.2	Barley	nucleus	18.35	51.79
EES03785	Sorghum	nucleus	53.48	50.75
EES18419	Sorghum	nucleus	51.9	50.62
Zm00001d043117_P002	Maize	nucleus	52.85	50.15
TraesCS1B01G317100.1	Wheat	nucleus	50.0	49.07
GSMUA_Achr6P15970_001	Banana	nucleus	30.06	48.97
TraesCS1A01G306300.1	Wheat	nucleus	50.0	48.77
TraesCS3D01G330300.1	Wheat	nucleus	51.9	48.66
TraesCS1D01G306000.1	Wheat	nucleus	50.0	48.32
TraesCS3A01G337200.1	Wheat	nucleus	51.58	48.22
TraesCS4D01G177700.1	Wheat	nucleus	33.86	47.98
TraesCS3B01G368300.1	Wheat	nucleus	51.9	47.81
HORVU1Hr1G068760.1	Barley	nucleus	50.0	47.73
TraesCS4B01G175800.1	Wheat	nucleus	33.54	47.11
Zm00001d010638_P001	Maize	nucleus	51.27	47.09
GSMUA_Achr10P...	Banana	nucleus	34.81	47.01
TraesCS4A01G128900.1	Wheat	nucleus	33.23	46.67
Os05t0489700-01	Rice	nucleus	49.37	46.57
TraesCS2B01G115700.1	Wheat	nucleus	39.56	45.62
Os07t0686100-01	Rice	nucleus	39.56	45.62
TraesCS2D01G098700.1	Wheat	nucleus	39.24	45.59
VIT_12s0034g00110.t01	Wine grape	nucleus	14.24	45.45
TraesCS2A01G099400.1	Wheat	nucleus	38.92	44.89
HORVU5Hr1G045180.1	Barley	nucleus	43.99	44.41
TraesCS5B01G139800.1	Wheat	nucleus	43.67	44.09
Os01t0813100-00	Rice	nucleus	48.1	43.93
HORVU3Hr1G079640.5	Barley	nucleus	46.84	43.92
TraesCS5A01G141500.1	Wheat	nucleus	43.35	43.77
KXG39483	Sorghum	nucleus	33.54	43.44
Zm00001d012538_P001	Maize	nucleus	37.97	42.86
HORVU0Hr1G023640.4	Barley	nucleus	46.52	42.12
Zm00001d022550_P001	Maize	nucleus	37.97	42.11
Os03t0322700-00	Rice	nucleus	30.38	39.34
TraesCS5D01G150700.1	Wheat	nucleus	38.92	38.92
KRH52002	Soybean	cytosol	11.71	37.76
OQU90534	Sorghum	nucleus	37.97	37.74
KRH10463	Soybean	nucleus	15.51	37.69
KRH43979	Soybean	nucleus	16.46	32.5
KRH61298	Soybean	nucleus	40.51	30.7
KRH22688	Soybean	nucleus	32.59	30.65
KRG96191	Soybean	nucleus	37.03	30.23
Solyc01g009510.1.1	Tomato	nucleus	18.04	30.0
KRH50289	Soybean	nucleus	39.56	29.48
KRH58352	Soybean	nucleus	20.89	29.46
KRH16634	Soybean	mitochondrion	27.22	29.25
KRH42235	Soybean	nucleus, plastid	21.84	28.87
KRH71134	Soybean	nucleus	39.87	28.7
KRH18840	Soybean	nucleus	23.73	27.78
KRH37750	Soybean	nucleus	18.35	27.49
KRH35126	Soybean	nucleus	20.57	26.32
KRH32737	Soybean	nucleus	36.39	25.73
KRH52003	Soybean	nucleus	26.27	25.23
KRH20056	Soybean	nucleus	37.03	23.68
KRH26009	Soybean	nucleus, plastid	11.39	19.46
KRH26633	Soybean	mitochondrion	31.65	15.53

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100811685	MapMan:15.5.4.1	EMBL:ACUP02004108	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G314400
GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	UniProt:I1KFN0	InterPro:IPR004827	ProteinID:KRH56271.1	EnsemblPlants:KRH56272
ProteinID:KRH56272	ProteinID:KRH56272.1	ProteinID:KRH56273.1	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217
PANTHER:PTHR22952	PANTHER:PTHR22952:SF137	SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002339FC0	InterPro:bZIP
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:50330237..50336541

Molecular Weight (calculated)

35015.3 Da

IEP (calculated)

9.235

GRAVY (calculated)

-0.809

Length

316 amino acids

Sequence
(BLAST)

001: MGSQCGGDNS GKHSQLQPLV PQNSMYSLTL DEVQNHLGDL GKPLSSMNLD ELLKNVWTVE ANQSTGVDIE GTALTSQAAL QRQASLSLTS ALSGKTVDEV
101: WRDIQQSKDN KDKKSQERQS TLGEMTLEDF LVKAGIVAEA SNRKNTGATV GVDSNVVAPQ FPQHGPWIQY AQPQYQHPQQ GLMGIYIPGQ NKAQPLHMGA
201: GVATDVLYAD GQVALSSPVM GTLSDTRRPG RKRGTSEDMV EKTVERRQKR MIKNRESAAR SRARKQAYTT ELEHKVSRLE EENEKLRRQQ ELEKMLSSNP
301: PPEPRYQIRR TSSASF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.