CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043117_P002	Maize	nucleus	90.39	90.39
Zm00001d012538_P001	Maize	nucleus	64.86	77.14
VIT_04s0069g01150.t01	Wine grape	nucleus	12.91	75.44
TraesCS3A01G337200.1	Wheat	nucleus	74.47	73.37
TraesCS3D01G330300.1	Wheat	nucleus	72.07	71.22
TraesCS3B01G368300.1	Wheat	nucleus	72.97	70.85
EES18419	Sorghum	nucleus	68.77	70.68
HORVU3Hr1G079640.5	Barley	nucleus	67.57	66.77
GSMUA_AchrUn_...	Banana	nucleus	54.05	65.69
GSMUA_Achr11P...	Banana	nucleus	47.75	65.43
Os01t0813100-00	Rice	nucleus	67.57	65.03
VIT_13s0175g00120.t01	Wine grape	nucleus	55.26	56.62
KRH62689	Soybean	nucleus	51.05	53.8
KRH56272	Soybean	nucleus	50.75	53.48
KRH44714	Soybean	nucleus	50.15	51.7
KRH13203	Soybean	nucleus	46.55	51.32
VIT_12s0034g00110.t01	Wine grape	nucleus	14.11	47.47
KXG39483	Sorghum	nucleus	33.33	45.49
OQU90534	Sorghum	nucleus	38.74	40.57
EER96850	Sorghum	nucleus	35.14	31.97
KXG19586	Sorghum	nucleus	33.03	31.61
EES03943	Sorghum	nucleus	24.62	31.3
OQU78764	Sorghum	nucleus	28.83	30.77
EES07580	Sorghum	nucleus	31.83	30.64
OQU80633	Sorghum	nucleus	34.23	29.84
EES18296	Sorghum	nucleus, plastid	23.72	29.59
KXG33733	Sorghum	nucleus	35.74	28.95
Solyc01g009510.1.1	Tomato	nucleus	15.32	26.84
KXG26981	Sorghum	nucleus	12.91	26.06

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EntrezGene:8082423	UniProt:C5XN55	ncoils:Coil	EnsemblPlants:EES03785
ProteinID:EES03785	ProteinID:EES03785.1	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF263	SMART:SM00338	EnsemblPlantsGene:SORBI_3003G332200
SUPFAM:SSF57959	UniParc:UPI0001A8578F	RefSeq:XP_002458665.1	InterPro:bZIP	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:65660270..65665228

Molecular Weight (calculated)

35974.5 Da

IEP (calculated)

7.956

GRAVY (calculated)

-0.729

Length

333 amino acids

Sequence
(BLAST)

001: MGSQTMASQA GGGGGGVGGS GGAGAAQRGQ MQSLARQGSL YNLTLDEVQS HLGEPLHSMN LEELLKSVFP DGLDPDGGTT SQYEQSSGLY RQGSITMPPE
101: LSKRTVDEVW KGIQDAPKRN VGEGGRRRRE RQPTLGEMTL EDFLVKAGVV TEGYLKDLND VGNVEQVGSA GAAGLTAGAH WLDHYQQRIT AIEPHQHGQH
201: SLPGAYMPGQ LALQPLNVGP GAILESYSDG HITSPMMGAL SDSPTPGTKR GSPGDVADKL MERRQKRMIK NRESAARSRA RKQAYTNELE NKVSRLEEEN
301: EKLKKQKELE KILFSAPLPE PKYQLRRTGS ATF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.