Factsheet for VIT_06s0009g01790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g01150.t01	Wine grape	nucleus	16.13	70.18
PGSC0003DMT400058469	Potato	nucleus	35.48	60.27
Solyc01g008980.2.1	Tomato	nucleus	35.08	59.59
KRG89815	Soybean	nucleus	64.92	58.76
KRH18666	Soybean	nucleus	61.69	55.04
VIT_13s0175g00120.t01	Wine grape	nucleus	63.31	48.31
VIT_12s0034g00110.t01	Wine grape	nucleus	18.15	45.45
VIT_18s0001g04500.t01	Wine grape	nucleus	41.13	32.8
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	32.26	29.09
VIT_06s0080g00340.t01	Wine grape	nucleus	35.08	26.85
VIT_03s0063g00310.t01	Wine grape	nucleus	43.15	26.16
VIT_12s0055g00420.t01	Wine grape	nucleus	31.05	25.75
VIT_08s0007g03420.t01	Wine grape	nucleus	39.11	24.25
VIT_18s0001g10450.t01	Wine grape	nucleus	43.55	24.16

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100254738	wikigene:100254738	MapMan:15.5.4.1	ProteinID:CCB49136	ProteinID:CCB49136.1
ncoils:Coil	UniProt:F6H9Y6	EMBL:FN595504	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827	EntrezGene:LOC100254738	wikigene:LOC100254738	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF263	SMART:SM00338	SUPFAM:SSF57959
TIGR:TC57689	UniParc:UPI00015CA121	ArrayExpress:VIT_06s0009g01790	EnsemblPlantsGene:VIT_06s0009g01790	EnsemblPlants:VIT_06s0009g01790.t01	unigene:Vvi.12943
RefSeq:XP_002269808	RefSeq:XP_002269808.1	InterPro:bZIP	:	:	:

Description

No Description!

Coordinates

chr6:-:13809459..13815625

Molecular Weight (calculated)

27671.0 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.624

Length

248 amino acids

Sequence
(BLAST)

001: MGSQVGGQLV RQSSWYSLTL DEVENQLGDL GKPLGSMNVD ELLKNVWMAE ANQCVSADID NASSKISLQR QASLTIAQAL SEKTVEEVWS DIQQGEKKKC
101: GDDIKGQVRE PTLGEMKLED FLVKAAVFVK GLDIVGVVTP PNFPQQMGLS PSPSVGTLSD TSIPGHERDA SMEKTVERRL KRKIKNRESA ARSRARKQAY
201: HNELVSKVSR LEEENVRLKK EKEVEKMFPC ESSTEPKYQL RRTSSVTF

Best Arabidopsis Sequence Match ( AT3G56850.1 )
(BLAST)

001: MDSQRGIVEQ AKSQSLNRQS SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ PSSMAVNGGA AAQEGLSRQG SLTLPRDLSK KTVDEVWKDI
101: QQNKNGGSAH ERRDKQPTLG EMTLEDLLLK AGVVTETIPG SNHDGPVGGG SAGSGAGLGQ NITQVGPWIQ YHQLPSMPQP QAFMPYPVSD MQAMVSQSSL
201: MGGLSDTQTP GRKRVASGEV VEKTVERRQK RMIKNRESAA RSRARKQAYT HELEIKVSRL EEENERLRKQ KEVEKILPSV PPPDPKRQLR RTSSAPF

Arabidopsis Description

DPBF3ABSCISIC ACID-INSENSITIVE 5-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LES3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.