Factsheet for VIT_08s0007g03420.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96191	Soybean	nucleus	59.5	61.5
KRH32737	Soybean	nucleus	65.75	58.84
VIT_04s0069g01150.t01	Wine grape	nucleus	8.0	56.14
CDX84141	Canola	nucleus	55.25	56.09
CDX75056	Canola	nucleus	54.5	54.64
KRH20056	Soybean	nucleus	67.0	54.25
Bra017251.1-P	Field mustard	nucleus	52.25	52.78
CDY43738	Canola	nucleus	52.75	52.23
Bra005287.1-P	Field mustard	nucleus	56.25	51.37
AT2G36270.3	Thale cress	nucleus	53.75	48.42
GSMUA_Achr8P07740_001	Banana	nucleus	41.5	47.84
GSMUA_Achr3P22710_001	Banana	nucleus	37.25	42.45
VIT_06s0080g00340.t01	Wine grape	nucleus	32.75	40.43
VIT_06s0009g01790.t01	Wine grape	nucleus	24.25	39.11
Os01t0859300-01	Rice	nucleus	31.0	38.39
VIT_03s0063g00310.t01	Wine grape	nucleus	36.75	35.94
VIT_13s0175g00120.t01	Wine grape	nucleus	29.0	35.69
TraesCS3D01G364900.1	Wheat	nucleus	34.25	35.13
TraesCS3B01G404300.1	Wheat	nucleus	34.25	35.04
TraesCS3B01G404600.1	Wheat	nucleus	33.75	34.88
TraesCS3A01G371800.1	Wheat	nucleus	34.0	34.78
TraesCS3B01G404200.1	Wheat	nucleus	33.5	34.36
VIT_12s0034g00110.t01	Wine grape	nucleus	8.5	34.34
TraesCS3B01G404400.1	Wheat	nucleus	33.0	33.76
VIT_18s0001g10450.t01	Wine grape	nucleus	37.5	33.56
TraesCS3B01G404500.1	Wheat	nucleus	32.75	33.5
VIT_12s0055g00420.t01	Wine grape	nucleus	24.75	33.11
KXG33733	Sorghum	nucleus	33.75	32.85
Zm00001d012296_P001	Maize	nucleus	33.75	32.77
TraesCS3A01G372000.1	Wheat	nucleus	31.0	32.38
TraesCS3D01G365500.1	Wheat	nucleus	30.75	32.11
TraesCS3A01G371900.3	Wheat	nucleus	30.5	31.94
TraesCS3D01G365000.1	Wheat	nucleus	31.5	31.82
TraesCS3A01G372200.1	Wheat	nucleus	30.0	31.41
HORVU3Hr1G084360.2	Barley	nucleus	32.75	30.97
Zm00001d042779_P001	Maize	nucleus	29.5	30.81
TraesCS3A01G372100.2	Wheat	nucleus	29.75	30.43
VIT_18s0072g00470.t01	Wine grape	nucleus, plastid	20.5	29.82
VIT_18s0001g04500.t01	Wine grape	nucleus	22.5	28.94

Protein Annotations

Gene3D:1.20.5.170	EntrezGene:100247734	wikigene:100247734	MapMan:15.5.4.1	InterPro:ABI5	EMBL:AM444640
ProteinID:CAN71955	ProteinID:CAN71955.1	ProteinID:CCB55426	ProteinID:CCB55426.1	ncoils:Coil	UniProt:F6HKK4
EMBL:FN595991	GO:GO:0003674	GO:GO:0003700	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0045893	InterPro:IPR004827	EntrezGene:LOC100247734
wikigene:LOC100247734	PFAM:PF00170	ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR22952	PANTHER:PTHR22952:SF217
SMART:SM00338	SUPFAM:SSF57959	UniParc:UPI0002107FAC	ArrayExpress:VIT_08s0007g03420	EnsemblPlantsGene:VIT_08s0007g03420	EnsemblPlants:VIT_08s0007g03420.t01
RefSeq:XP_002276783	RefSeq:XP_002276783.2	InterPro:bZIP	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:17372100..17378057

Molecular Weight (calculated)

43958.7 Da

IEP (calculated)

8.212

GRAVY (calculated)

-0.799

Length

400 amino acids

Sequence
(BLAST)

001: MVGSESETLS QSEVESGLQE DQQPKNHGMP SLGRQSSIYS LTLDEFQHTL CENGKNFGSM NMDEFLTSIW TAEENQATNF NHISNSQMSL SETSMEKPIA
101: KQPSLARQGS LSLPAPFCQK TVDEVWSEIH KAQQQQQQDS VHNAESAHRQ PTLGEMTLED FLIRAGVVRE QPTATAPAQH QQQHQYGLYQ NNNTISPTFA
201: RPVMGMGGGA GVGSFQTLPQ SSGAAGESSG YAGNGKRNGG YPKTSACLGG RVGNGGGVYG PGQTLAMEST VSPVSSDGMC PNQIDNTAGQ FGLDVGGLRG
301: RKRIIDGPVE KVVERRQRRM IKNRESAARS RARKQAYTVE LEAELNQLKE ENTLLQQALA DFERKRKQQY LEELKMKTQT KAEKAKEKLK KMRKTWSCPL

Best Arabidopsis Sequence Match ( AT2G36270.1 )
(BLAST)

001: MVTRETKLTS EREVESSMAQ ARHNGGGGGE NHPFTSLGRQ SSIYSLTLDE FQHALCENGK NFGSMNMDEF LVSIWNAEEN NNNQQQAAAA AGSHSVPANH
101: NGFNNNNNNG GEGGVGVFSG GSRGNEDANN KRGIANESSL PRQGSLTLPA PLCRKTVDEV WSEIHRGGGS GNGGDSNGRS SSSNGQNNAQ NGGETAARQP
201: TFGEMTLEDF LVKAGVVREH PTNPKPNPNP NQNQNPSSVI PAAAQQQLYG VFQGTGDPSF PGQAMGVGDP SGYAKRTGGG GYQQAPPVQA GVCYGGGVGF
301: GAGGQQMGMV GPLSPVSSDG LGHGQVDNIG GQYGVDMGGL RGRKRVVDGP VEKVVERRQR RMIKNRESAA RSRARKQAYT VELEAELNQL KEENAQLKHA
401: LAELERKRKQ QYFESLKSRA QPKLPKSNGR LRTLMRNPSC PL

Arabidopsis Description

ABI5Basic-leucine zipper (bZIP) transcription factor family protein [Source:TAIR;Acc:AT2G36270]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.