Factsheet for TraesCS4D01G046400.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 19786127
plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G292000.1
TraesCS7B01G183000.7
TraesCS7D01G288000.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38480.1	TraesCS7A01G292000.1	AT2G18876.1	21798944
AT5G38480.1	TraesCS7B01G183000.7	AT2G18876.1	21798944
AT5G38480.1	TraesCS7D01G288000.2	AT2G18876.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G045500.2	Wheat	cytosol	100.0	100.0
HORVU4Hr1G007370.1	Barley	plasma membrane	100.0	100.0
TraesCS4A01G268700.1	Wheat	cytosol	100.0	100.0
Os03t0710800-01	Rice	nucleus, plasma membrane	96.55	96.92
Bra040592.1-P	Field mustard	cytosol	86.59	86.59
CDY51543	Canola	cytosol	86.59	86.59
GSMUA_Achr7P10320_001	Banana	cytosol	43.68	86.36
GSMUA_Achr2P16070_001	Banana	cytosol	43.68	86.36
CDY28698	Canola	cytosol	86.21	86.21
Solyc03g034180.2.1	Tomato	cytosol	85.06	86.05
Bra001049.1-P	Field mustard	cytosol	85.44	85.44
CDX74252	Canola	cytosol	85.06	85.06
Solyc02g063070.2.1	Tomato	plastid	84.67	85.0
PGSC0003DMT400062153	Potato	cytosol	84.67	85.0
KRH01783	Soybean	nucleus	83.52	84.82
CDX74521	Canola	cytosol	83.14	84.44
Bra028187.1-P	Field mustard	cytosol	83.14	84.44
AT5G38480.1	Thale cress	cytosol	82.38	84.31
CDX91996	Canola	cytosol	84.29	84.29
CDY01659	Canola	cytosol	82.76	84.05
VIT_14s0006g03230.t01	Wine grape	cytosol	83.91	83.59
AT3G02520.2	Thale cress	cytosol	84.67	83.4
CDX67405	Canola	cytosol	81.99	82.95
PGSC0003DMT400050389	Potato	cytosol	82.38	82.69
Bra028409.1-P	Field mustard	cytosol	81.61	82.56
TraesCS2D01G325600.1	Wheat	golgi, plastid	83.14	82.51
CDY71290	Canola	cytosol	81.23	82.49
TraesCS3D01G055500.1	Wheat	golgi	81.99	81.68
TraesCS4D01G155900.1	Wheat	plastid	82.76	81.2
KRH46909	Soybean	cytosol	80.84	81.15
AT5G16050.2	Thale cress	cytosol	81.23	79.1
TraesCS7D01G292400.1	Wheat	cytosol	73.95	73.95

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008426	GO:GO:0019904
GO:GO:0030234	InterPro:IPR036815	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796
ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF40	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:TraesCS4D01G046400
EnsemblPlants:TraesCS4D01G046400.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:21886752..21888315

Molecular Weight (calculated)

29266.4 Da

IEP (calculated)

4.531

GRAVY (calculated)

-0.445

Length

261 amino acids

Sequence
(BLAST)

001: MSTAEATREE NVYMAKLAEQ AERYEEMVEF MEKVAKTADV GELTVEERNL LSVAYKNVIG ARRASWRIIS SIEQKEESRG NEAYVASIKE YRTRIETELS
101: KICDGILKLL DSHLVPSATA AESKVFYLKM KGDYHRYLAE FKAGAERKEA AENTLVAYKS AQDIALADLP TTHPIRLGLA LNFSVFYYEI LNSPDRACNL
201: AKQAFDEAIA ELDSLGEESY KDSTLIMQLL RDNLTLWTSD NAEEGGDEIK EAASKPEGEG H

Best Arabidopsis Sequence Match ( AT5G38480.1 )
(BLAST)

001: MSTREENVYM AKLAEQAERY EEMVEFMEKV AKTVDVEELS VEERNLLSVA YKNVIGARRA SWRIISSIEQ KEESKGNEDH VAIIKDYRGK IESELSKICD
101: GILNVLEAHL IPSASPAESK VFYLKMKGDY HRYLAEFKAG AERKEAAEST LVAYKSASDI ATAELAPTHP IRLGLALNFS VFYYEILNSP DRACSLAKQA
201: FDDAIAELDT LGEESYKDST LIMQLLRDNL TLWTSDMTDE AGDEIKEASK PDGAE

Arabidopsis Description

GRF3RCI1 [Source:UniProtKB/TrEMBL;Acc:A0A178UA42]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.