Factsheet for PGSC0003DMT400052619

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053260.2.1	Tomato	plastid	99.23	99.23
PGSC0003DMT400020200	Potato	cytosol	86.59	87.26
KRH27339	Soybean	cytosol	79.31	78.11
PGSC0003DMT400016422	Potato	cytosol	75.1	77.78
KRH21981	Soybean	cytosol	77.78	77.19
PGSC0003DMT400045782	Potato	cytosol	66.67	68.5
PGSC0003DMT400072941	Potato	cytosol	74.71	68.42
PGSC0003DMT400062153	Potato	cytosol	67.82	68.08
PGSC0003DMT400060654	Potato	cytosol	65.9	67.45
PGSC0003DMT400041810	Potato	cytosol	66.28	67.05
PGSC0003DMT400079172	Potato	cytosol	66.28	66.8
PGSC0003DMT400050389	Potato	cytosol	66.28	66.54
PGSC0003DMT400041634	Potato	cytosol	62.45	65.46
PGSC0003DMT400033585	Potato	cytosol	59.39	61.51
GSMUA_Achr4P15130_001	Banana	cytosol	54.79	58.85
Zm00001d035316_P001	Maize	cytosol	21.84	38.26

Protein Annotations

Gene3D:1.20.190.20	EntrezGene:102596432	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain
MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904
InterPro:IPR036815	EMBL:LC011879	UniProt:M1BTP6	PFAM:PF00244	EnsemblPlantsGene:PGSC0003DMG400020425	PGSC:PGSC0003DMG400020425
EnsemblPlants:PGSC0003DMT400052619	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860
PANTHER:PTHR18860:SF31	SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0002959056	RefSeq:XP_006348856.1	SEG:seg

Description

14-3-3 protein 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400020425]

Coordinates

chr7:-:50088780..50093376

Molecular Weight (calculated)

29475.5 Da

IEP (calculated)

4.458

GRAVY (calculated)

-0.561

Length

261 amino acids

Sequence
(BLAST)

001: MASSKERENF VYVAKLAEQA ERYDEMVEAM KNVANMDVEL TVEERNLLSV GYKNVVGSRR ASWRILSSIE QKEESRGNEQ NVKRIKEYLQ KVESELTNIC
101: NDIMVVIDQH LIPSCSAGES TVFYHKMKGD YYRYLAEFKA GNDKKEVAEL SLKAYQSATT AAEAELPPTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ
201: AFDEAISELD SLNEDSYKDS TLIMQLLRDN LTLWTSDLPE DAEDAQKGDA TNKAGGGEDA E

Best Arabidopsis Sequence Match ( AT2G42590.2 )
(BLAST)

001: MGSGKERDTF VYLAKLSEQA ERYEEMVESM KSVAKLNVDL TVEERNLLSV GYKNVIGSRR ASWRIFSSIE QKEAVKGNDV NVKRIKEYME KVELELSNIC
101: IDIMSVLDEH LIPSASEGES TVFFNKMKGD YYRYLAEFKS GNERKEAADQ SLKAYEIATT AAEAKLPPTH PIRLGLALNF SVFYYEIMNA PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDISE EGDDAHKTNG SAKPGAGGDD AE

Arabidopsis Description

GRF9General regulatory factor 9 [Source:UniProtKB/TrEMBL;Acc:F4IP55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.