Factsheet for Solyc07g053260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 30583044
nucleus: 30583044

plastid: 20363867
extracellular: 22364583
plastid: 22908117
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

gfp PMID: 30583044 doi

P Hloušková, M Černý, N Kořínková, M Luklová, EG Minguet, B Brzobohatý, P Galuszka, V Bergougnoux

Department of Molecular Biology, Centre of the Region Hana for Biotechnological and Agricultural Research, Palacky University in Olomouc, Šlechtitelu 27, 783 71 Olomouc, Czechia., Department of Molecular Biology, Centre of the Region Hana for Biotechnological and Agricultural Research, Palacky University in Olomouc, Šlechtitelu 27, 783 71 Olomouc, Czechia. Electronic address: veronique.bergougnoux@upol.cz., Instituto de Biología Molecular y Celular de Plantas (UPV-Consejo Superior de Investigaciones Científicas), Universidad Politécnica de Valencia, 46022, Valencia, Spain., Laboratory of Plant Molecular Biology, Institute of Biophysics AS CR and CEITEC-Central European Institute of Technology, Mendel University in Brno, Zemědělská 1, 613 00 Brno, Czechia.

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052619	Potato	cytosol	99.23	99.23
Solyc12g010860.1.1	Tomato	plastid	85.82	85.82
KRH27339	Soybean	cytosol	79.31	78.11
KRH21981	Soybean	cytosol	77.78	77.19
Solyc04g074230.2.1	Tomato	extracellular	74.33	72.93
Solyc01g010360.2.1	Tomato	cytosol	73.18	69.71
Solyc12g057110.2.1	Tomato	extracellular, nucleus	67.43	69.29
Solyc05g012420.2.1	Tomato	unclear	75.1	68.77
Solyc03g034180.2.1	Tomato	cytosol	67.05	67.83
Solyc02g063070.2.1	Tomato	plastid	67.43	67.69
Solyc04g012120.2.1	Tomato	extracellular, nucleus	65.9	67.45
Solyc11g010470.1.1	Tomato	extracellular, nucleus	63.22	66.27
Solyc11g010200.1.1	Tomato	nucleus	67.05	65.06
Solyc04g074510.2.1	Tomato	extracellular, nucleus	66.28	64.55
Solyc04g076060.2.1	Tomato	nucleus	59.39	61.51
GSMUA_Achr4P15130_001	Banana	cytosol	55.17	59.26
Zm00001d035316_P001	Maize	cytosol	21.84	38.26

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:P93214	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF31	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc07g053260.2	EnsemblPlants:Solyc07g053260.2.1
UniParc:UPI0000124DEC	EMBL:X98865	SEG:seg	:	:	:

Description

TFT914-3-3 protein 9 [Source:UniProtKB/Swiss-Prot;Acc:P93214]

Coordinates

chr7:+:61735445..61739996

Molecular Weight (calculated)

29433.5 Da

IEP (calculated)

4.458

GRAVY (calculated)

-0.538

Length

261 amino acids

Sequence
(BLAST)

001: MASSKERENF VYVAKLAEQA ERYDEMVEAM KNVANMDVEL TVEERNLLSV GYKNVVGSRR ASWRILSSIE QKEESRGNEQ NVKRIKEYLQ KVESELTNIC
101: NDIMVVIDQH LIPSCSAGES TVFYHKMKGD YYRYLAEFKA GNDKKEVAEL SLKAYQAATT AAEAELAPTH PIRLGLALNF SVFYYEIMNS PERACHLAKQ
201: AFDEAISELD SLNEDSYKDS TLIMQLLRDN LTLWTSDLPE DAEDAQKGDA TNKAGGGEDA E

Best Arabidopsis Sequence Match ( AT2G42590.2 )
(BLAST)

001: MGSGKERDTF VYLAKLSEQA ERYEEMVESM KSVAKLNVDL TVEERNLLSV GYKNVIGSRR ASWRIFSSIE QKEAVKGNDV NVKRIKEYME KVELELSNIC
101: IDIMSVLDEH LIPSASEGES TVFFNKMKGD YYRYLAEFKS GNERKEAADQ SLKAYEIATT AAEAKLPPTH PIRLGLALNF SVFYYEIMNA PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDISE EGDDAHKTNG SAKPGAGGDD AE

Arabidopsis Description

GRF9General regulatory factor 9 [Source:UniProtKB/TrEMBL;Acc:F4IP55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.