Factsheet for Solyc04g076060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033585	Potato	cytosol	99.21	99.21
KRH62193	Soybean	endoplasmic reticulum	83.73	84.4
KRH52909	Soybean	endoplasmic reticulum	83.33	84.0
Solyc11g010470.1.1	Tomato	extracellular, nucleus	82.94	83.94
GSMUA_Achr3P06740_001	Banana	cytosol	65.87	74.77
Solyc12g057110.2.1	Tomato	extracellular, nucleus	74.21	73.62
Solyc04g012120.2.1	Tomato	extracellular, nucleus	72.22	71.37
Solyc03g034180.2.1	Tomato	cytosol	72.22	70.54
Solyc02g063070.2.1	Tomato	plastid	72.62	70.38
Solyc04g074510.2.1	Tomato	extracellular, nucleus	72.62	68.28
Solyc11g010200.1.1	Tomato	nucleus	72.62	68.03
TraesCS7A01G295500.1	Wheat	golgi	68.65	66.8
TraesCS7B01G183800.1	Wheat	plastid	69.05	66.67
TraesCS7D01G292400.1	Wheat	cytosol	69.05	66.67
EES14338	Sorghum	cytosol	68.25	66.41
Os08t0480800-01	Rice	plasma membrane	68.65	65.53
Zm00001d052796_P003	Maize	cytosol	67.06	62.83
Solyc04g074230.2.1	Tomato	extracellular	62.7	59.4
Solyc07g053260.2.1	Tomato	plastid	61.51	59.39
Zm00001d006462_P001	Maize	cytosol	34.92	59.06
Solyc01g010360.2.1	Tomato	cytosol	63.1	58.03
Solyc05g012420.2.1	Tomato	unclear	64.29	56.84
Solyc12g010860.1.1	Tomato	plastid	57.54	55.56

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815
UniProt:P93207	PFAM:PF00244	PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797
PANTHER:PTHR18860	PANTHER:PTHR18860:SF27	SMART:SM00101	SUPFAM:SSF48445	EnsemblPlantsGene:Solyc04g076060.2	EnsemblPlants:Solyc04g076060.2.1
UniParc:UPI0000124DEE	EMBL:X98866	:	:	:	:

Description

TFT1014-3-3 protein 10 [Source:UniProtKB/Swiss-Prot;Acc:P93207]

Coordinates

chr4:-:61027437..61032231

Molecular Weight (calculated)

28626.0 Da

IEP (calculated)

4.502

GRAVY (calculated)

-0.356

Length

252 amino acids

Sequence
(BLAST)

001: MAALIPENLS REQCLYLAKL AEQAERYEEM VQFMDKLVLN STPAGELTVE ERNLLSVAYK NVIGSLRAAW RIVSSIEQKE ESRKNEEHVH LVKEYRGKVE
101: NELSQVCAGI LKLLESNLVP SATTSESKVF YLKMKGDYYR YLAEFKIGDE RKQAAEDTMN SYKAAQEIAL TDLPPTHPIR LGLALNFSVF YFEILNSSDK
201: ACSMAKQAFE EAIAELDTLG EESYKDSTLI MQLLRDNLTL WTSDAQDQLD ES

Best Arabidopsis Sequence Match ( AT5G65430.1 )
(BLAST)

001: MATTLSRDQY VYMAKLAEQA ERYEEMVQFM EQLVSGATPA GELTVEERNL LSVAYKNVIG SLRAAWRIVS SIEQKEESRK NEEHVSLVKD YRSKVETELS
101: SICSGILRLL DSHLIPSATA SESKVFYLKM KGDYHRYLAE FKSGDERKTA AEDTMIAYKA AQDVAVADLA PTHPIRLGLA LNFSVFYYEI LNSSEKACSM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA

Arabidopsis Description

GRF8General regulatory factor 8 [Source:UniProtKB/TrEMBL;Acc:F4KHY7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.