CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58958	Soybean	endoplasmic reticulum	96.53	96.53
KRH27042	Soybean	nucleus	84.17	83.52
KRH22287	Soybean	nucleus, plasma membrane	83.4	82.76
GSMUA_Achr6P26860_001	Banana	cytosol	83.01	81.13
GSMUA_AchrUn_...	Banana	cytosol	79.54	80.16
GSMUA_Achr9P06440_001	Banana	cytosol	81.47	79.32
GSMUA_Achr2P19330_001	Banana	plasma membrane	81.08	79.25
GSMUA_Achr7P13910_001	Banana	cytosol	79.92	78.71
KRH21981	Soybean	cytosol	78.76	77.57
KRH27339	Soybean	cytosol	78.76	76.98
KRG89486	Soybean	cytosol	74.9	74.62
KRH50527	Soybean	cytosol	74.52	74.52
KRH70879	Soybean	endoplasmic reticulum	74.52	74.52
KRH75027	Soybean	endoplasmic reticulum	74.52	74.52
KRG89721	Soybean	cytosol	19.69	72.86
KRH01783	Soybean	nucleus	67.57	68.09
KRH46909	Soybean	cytosol	68.34	68.08
KRH72385	Soybean	endoplasmic reticulum, nucleus	67.18	66.41
KRH62193	Soybean	endoplasmic reticulum	61.78	64.0
KRH52909	Soybean	endoplasmic reticulum	61.39	63.6
KRH53025	Soybean	cytosol	67.95	63.08
KRH62315	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	68.73	61.81
GSMUA_Achr8P27280_001	Banana	cytosol	80.31	60.64
KRH16772	Soybean	cytosol	67.57	55.73
KRH05108	Soybean	cytosol	27.03	44.03

Protein Annotations

Gene3D:1.20.190.20	EntrezGene:100807980	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain
MapMan:35.1	UniProt:A0A0R4J3S4	EMBL:ACUP02004833	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G115800	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	InterPro:IPR036815	EnsemblPlants:KRH42856	ProteinID:KRH42856
ProteinID:KRH42856.1	ProteinID:KRH42857.1	ProteinID:KRH42858.1	ProteinID:KRH42859.1	PFAM:PF00244	PIRSF:PIRSF000868
PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF31	SMART:SM00101
SUPFAM:SSF48445	UniParc:UPI00018C7076	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:8876891..8880186

Molecular Weight (calculated)

29249.3 Da

IEP (calculated)

4.607

GRAVY (calculated)

-0.553

Length

259 amino acids

Sequence
(BLAST)

001: MASTKERENF VYTAKLAEQA ERYEEMVEAM KNVAKLNVEL TVEERNLLSV GYKNVVGARR ASWRILSSIE QKEEAKGNDV SVKRIKEYRQ KVESELSNIC
101: SDIMTVIDEH LIPSSSAGEP SVFFYKMKGD YYRYLAEFKS GDERKEAADH SMKAYQSAST TAEAELPPTH PIRLGLALNF SVFYYEILNS PERACHLAKQ
201: AFDEAISELD TLSEESYKDS TLIMQLLRDN LTLWTSDIPE EGAEEQKVDS ARAAGGDNA

Best Arabidopsis Sequence Match ( AT2G42590.2 )
(BLAST)

001: MGSGKERDTF VYLAKLSEQA ERYEEMVESM KSVAKLNVDL TVEERNLLSV GYKNVIGSRR ASWRIFSSIE QKEAVKGNDV NVKRIKEYME KVELELSNIC
101: IDIMSVLDEH LIPSASEGES TVFFNKMKGD YYRYLAEFKS GNERKEAADQ SLKAYEIATT AAEAKLPPTH PIRLGLALNF SVFYYEIMNA PERACHLAKQ
201: AFDEAISELD TLNEESYKDS TLIMQLLRDN LTLWTSDISE EGDDAHKTNG SAKPGAGGDD AE

Arabidopsis Description

GRF9General regulatory factor 9 [Source:UniProtKB/TrEMBL;Acc:F4IP55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.