CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42856	Soybean	nucleus	96.53	96.53
KRH27042	Soybean	nucleus	82.24	81.61
KRH22287	Soybean	nucleus, plasma membrane	81.85	81.23
GSMUA_Achr6P26860_001	Banana	cytosol	81.85	80.0
GSMUA_AchrUn_...	Banana	cytosol	79.15	79.77
GSMUA_Achr9P06440_001	Banana	cytosol	81.08	78.95
GSMUA_Achr7P13910_001	Banana	cytosol	79.54	78.33
GSMUA_Achr2P19330_001	Banana	plasma membrane	79.92	78.11
KRH21981	Soybean	cytosol	78.38	77.19
KRH27339	Soybean	cytosol	78.38	76.6
KRG89486	Soybean	cytosol	74.9	74.62
KRH50527	Soybean	cytosol	74.52	74.52
KRH70879	Soybean	endoplasmic reticulum	74.52	74.52
KRH75027	Soybean	endoplasmic reticulum	74.52	74.52
KRG89721	Soybean	cytosol	18.53	68.57
KRH01783	Soybean	nucleus	67.95	68.48
KRH46909	Soybean	cytosol	68.34	68.08
KRH72385	Soybean	endoplasmic reticulum, nucleus	67.18	66.41
KRH62193	Soybean	endoplasmic reticulum	60.62	62.8
KRH53025	Soybean	cytosol	67.57	62.72
KRH52909	Soybean	endoplasmic reticulum	60.23	62.4
KRH62315	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	69.11	62.15
GSMUA_Achr8P27280_001	Banana	cytosol	80.31	60.64
KRH16772	Soybean	cytosol	67.57	55.73
KRH05108	Soybean	cytosol	27.03	44.03

Protein Annotations

Gene3D:1.20.190.20	InterPro:14-3-3	InterPro:14-3-3_CS	InterPro:14-3-3_dom_sf	InterPro:14-3-3_domain	MapMan:35.1
EntrezGene:547891	EMBL:ACUP02003295	ncoils:Coil	UniProt:E9KNA8	EnsemblPlantsGene:GLYMA_05G158100	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0019904	EMBL:HM004361	InterPro:IPR036815	ProteinID:KRH58956.1
ProteinID:KRH58957.1	EnsemblPlants:KRH58958	ProteinID:KRH58958	ProteinID:KRH58958.1	ProteinID:KRH58959.1	PFAM:PF00244
PIRSF:PIRSF000868	PRINTS:PR00305	ScanProsite:PS00796	ScanProsite:PS00797	PANTHER:PTHR18860	PANTHER:PTHR18860:SF31
SMART:SM00101	SUPFAM:SSF48445	UniParc:UPI0001F72C46	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:+:35025422..35029392

Molecular Weight (calculated)

29251.3 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.475

Length

259 amino acids

Sequence
(BLAST)

001: MASTKERENF VYVAKLAEQA ERYEEMVEAM KNVAKLNVEL TVEERNLLSV GYKNVVGARR ASWRILSSIE QKEEAKGNDV SVKRIKEYRL KVESELSNIC
101: SDIMTVIDEY LIPSSSSGEP SVFFYKMKGD YYRYLAEFKS GDERKEAADH SMKAYQLAST TAEAELASTH PIRLGLALNF SVFYYEILNS PERACHLAKQ
201: AFDEAISELD TLSEESYKDS TLIMQLLRDN LTLWTSDIPE DGAEEQKVDS ARAAGGDDA

Best Arabidopsis Sequence Match ( AT1G26480.1 )
(BLAST)

001: MSSSGSDKER ETFVYMAKLS EQAERYDEMV ETMKKVARVN SELTVEERNL LSVGYKNVIG ARRASWRIMS SIEQKEESKG NESNVKQIKG YRQKVEDELA
101: NICQDILTII DQHLIPHATS GEATVFYYKM KGDYYRYLAE FKTEQERKEA AEQSLKGYEA ATQAASTELP STHPIRLGLA LNFSVFYYEI MNSPERACHL
201: AKQAFDEAIA ELDTLSEESY KDSTLIMQLL RDNLTLWTSD LPEDGGEDNI KTEESKQEQA KPADATEN

Arabidopsis Description

GRF12GRF12 [Source:UniProtKB/TrEMBL;Acc:A0A178WJF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.