Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0199g00190.t01 | Wine grape | cytosol | 30.98 | 71.15 |
| VIT_18s0001g07240.t01 | Wine grape | cytosol | 27.02 | 62.3 |
| KRH05108 | Soybean | cytosol | 15.83 | 57.86 |
| VIT_18s0001g06330.t01 | Wine grape | extracellular | 25.3 | 56.54 |
| VIT_07s0191g00090.t01 | Wine grape | cytosol | 24.61 | 56.08 |
| VIT_14s0006g03230.t01 | Wine grape | cytosol | 24.96 | 55.34 |
| PGSC0003DMT400041810 | Potato | cytosol | 24.44 | 55.04 |
| Solyc04g012120.2.1 | Tomato | extracellular, nucleus | 24.1 | 54.9 |
| PGSC0003DMT400060654 | Potato | cytosol | 24.1 | 54.9 |
| Bra003649.1-P | Field mustard | cytosol | 24.27 | 54.23 |
| CDX68022 | Canola | cytosol | 24.27 | 54.23 |
| CDX79255 | Canola | cytosol | 24.27 | 54.23 |
| AT1G78300.1 | Thale cress | cytosol | 24.1 | 54.05 |
| Bra035027.1-P | Field mustard | cytosol | 23.92 | 53.46 |
| CDX88436 | Canola | cytosol | 23.92 | 53.46 |
| Zm00001d013429_P001 | Maize | extracellular | 10.67 | 53.45 |
| CDX91676 | Canola | cytosol | 23.75 | 53.28 |
| Bra008355.1-P | Field mustard | cytosol | 22.89 | 53.2 |
| CDY41483 | Canola | cytosol | 23.58 | 52.9 |
| CDY14618 | Canola | cytosol | 23.58 | 52.69 |
| CDY46646 | Canola | cytosol | 23.58 | 52.69 |
| Bra016380.1-P | Field mustard | cytosol | 23.41 | 52.51 |
| CDY28408 | Canola | cytosol | 23.58 | 52.09 |
| Bra034430.1-P | Field mustard | cytosol | 23.58 | 52.09 |
| CDY00447 | Canola | cytosol | 23.24 | 51.92 |
| Bra012325.1-P | Field mustard | cytosol | 23.41 | 51.71 |
| CDX73313 | Canola | cytosol | 23.58 | 51.7 |
| Solyc11g010200.1.1 | Tomato | nucleus | 23.92 | 51.67 |
| CDY12024 | Canola | cytosol | 23.06 | 51.34 |
| Bra028068.1-P | Field mustard | cytosol | 23.06 | 51.34 |
| VIT_18s0001g05720.t01 | Wine grape | cytosol | 21.0 | 48.41 |
| VIT_01s0011g00620.t01 | Wine grape | cytosol | 21.51 | 47.17 |
| AT1G35160.2 | Thale cress | cytosol | 23.75 | 46.78 |
| CDX87455 | Canola | cytosol | 23.92 | 46.49 |
| VIT_19s0014g01420.t01 | Wine grape | cytosol | 20.65 | 45.45 |
| AT4G09000.2 | Thale cress | cytosol | 24.44 | 44.65 |
| VIT_10s0003g01240.t01 | Wine grape | cytosol | 21.17 | 43.01 |
| GSMUA_Achr3P17880_001 | Banana | cytosol | 12.05 | 39.77 |
Protein Annotations
| Gene3D:1.20.190.20 | InterPro:14-3-3 | InterPro:14-3-3_CS | InterPro:14-3-3_dom_sf | InterPro:14-3-3_domain | MapMan:35.1 |
| ProteinID:CCB45246 | ProteinID:CCB45246.1 | ncoils:Coil | InterPro:DUF4283 | UniProt:F6GZ60 | EMBL:FN594987 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0019904 | InterPro:IPR036815 |
| PFAM:PF00244 | PFAM:PF14111 | PFAM:PF14392 | PRINTS:PR00305 | ScanProsite:PS00796 | PANTHER:PTHR18860 |
| PANTHER:PTHR18860:SF27 | SMART:SM00101 | SUPFAM:SSF48445 | UniParc:UPI00021080FE | ArrayExpress:VIT_00s0199g00140 | EnsemblPlantsGene:VIT_00s0199g00140 |
| EnsemblPlants:VIT_00s0199g00140.t01 | InterPro:Zn_knuckle_CX2CX4HX4C | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrUn:+:11185021..11188247
Molecular Weight (calculated)
66032.0 Da
IEP (calculated)
6.316
GRAVY (calculated)
-0.260
Length
581 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPPSVPETL TREQYVYMAK LAEQAERYEE MAKFMEKLVF DSTPVGELTV EERNLLSVAY KNVIGALRAA WRIVSSIEQK EEGRQNDDHV SLVKDYRSTV
101: ESELSEVCAN ILKLIESHLI PSASSSESKV FFLKMKGDYH RYLAEFKFGN ERKEAAEFTM LAYKAAQVVF ASVMDSWLEN LSLLVDEEEE LVLDTGENGS
201: TTQSFDLCLI GRFLTDRMIN FNAMKHCLAS VWRLEKGICI KEINKQLFLF QFFHIVDLKR VLEGGPWTFD NHLLILHHLK QGAIPTAIPL FHVLFWIQVY
301: DILVGSMSLN VGKQLDNFIG KFVDYNINNN AGLWRNFMRI RVLLDVRQPL KMWKRIRKPQ GEWSLVHFKY ERLSTFCYLC GMLGHSEKFC NKLFLITDGD
401: IKREWSTDLR VPVRRGSEYG GERWLRETME NSTHADDSEY GNIAMGSGYG SDFSIQEVIS SESGGIKDFQ TANRLPQILH GLQTFPTCTT KPTGSSHADG
501: HVITSRGDNM GFKENGLEIV EDKKRRRAEL FFLGHSDSMA IDSGERAIVS QVAVAANRVL ETSSTTNISL AGPSNQACQQ P
101: ESELSEVCAN ILKLIESHLI PSASSSESKV FFLKMKGDYH RYLAEFKFGN ERKEAAEFTM LAYKAAQVVF ASVMDSWLEN LSLLVDEEEE LVLDTGENGS
201: TTQSFDLCLI GRFLTDRMIN FNAMKHCLAS VWRLEKGICI KEINKQLFLF QFFHIVDLKR VLEGGPWTFD NHLLILHHLK QGAIPTAIPL FHVLFWIQVY
301: DILVGSMSLN VGKQLDNFIG KFVDYNINNN AGLWRNFMRI RVLLDVRQPL KMWKRIRKPQ GEWSLVHFKY ERLSTFCYLC GMLGHSEKFC NKLFLITDGD
401: IKREWSTDLR VPVRRGSEYG GERWLRETME NSTHADDSEY GNIAMGSGYG SDFSIQEVIS SESGGIKDFQ TANRLPQILH GLQTFPTCTT KPTGSSHADG
501: HVITSRGDNM GFKENGLEIV EDKKRRRAEL FFLGHSDSMA IDSGERAIVS QVAVAANRVL ETSSTTNISL AGPSNQACQQ P
001: MAATLGRDQY VYMAKLAEQA ERYEEMVQFM EQLVTGATPA EELTVEERNL LSVAYKNVIG SLRAAWRIVS SIEQKEESRK NDEHVSLVKD YRSKVESELS
101: SVCSGILKLL DSHLIPSAGA SESKVFYLKM KGDYHRYMAE FKSGDERKTA AEDTMLAYKA AQDIAAADMA PTHPIRLGLA LNFSVFYYEI LNSSDKACNM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA
101: SVCSGILKLL DSHLIPSAGA SESKVFYLKM KGDYHRYMAE FKSGDERKTA AEDTMLAYKA AQDIAAADMA PTHPIRLGLA LNFSVFYYEI LNSSDKACNM
201: AKQAFEEAIA ELDTLGEESY KDSTLIMQLL RDNLTLWTSD MQEQMDEA
Arabidopsis Description
GRF6G-box regulating factor 6 [Source:TAIR;Acc:AT5G10450]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.