Factsheet for VIT_13s0067g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g00300.t01	Wine grape	cytosol	28.79	94.94
VIT_00s0724g00010.t01	Wine grape	cytosol	69.29	84.54
VIT_13s0084g00010.t01	Wine grape	cytosol	82.73	78.22
VIT_13s0067g00370.t01	Wine grape	plastid	87.14	76.95
VIT_00s2271g00010.t01	Wine grape	cytosol	54.7	72.15
VIT_13s0067g00090.t01	Wine grape	cytosol	46.26	68.86
VIT_13s0067g03700.t01	Wine grape	cytosol	69.87	64.31
VIT_13s0067g03770.t01	Wine grape	cytosol	41.46	62.25
VIT_13s0067g03830.t01	Wine grape	plastid	52.4	62.05
VIT_13s0019g00060.t01	Wine grape	plastid	68.52	60.1
VIT_13s0067g03790.t01	Wine grape	plastid	67.18	59.02
VIT_13s0067g03740.t01	Wine grape	cytosol	46.64	57.58
PGSC0003DMT400055897	Potato	cytosol	12.48	53.72
PGSC0003DMT400089009	Potato	cytosol	16.12	52.17
VIT_12s0134g00040.t01	Wine grape	mitochondrion	21.5	50.0
Solyc01g105960.2.1	Tomato	cytosol	33.78	49.72
CDY68676	Canola	cytosol	32.25	44.68
VIT_12s0134g00020.t01	Wine grape	plastid	49.14	42.6
CDY66920	Canola	cytosol	26.87	42.3
VIT_12s0134g00030.t01	Wine grape	mitochondrion	46.83	42.14
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	19.77	41.04
Bra025163.1-P	Field mustard	cytosol	43.76	40.71
Bra021082.1-P	Field mustard	cytosol	42.03	40.11
VIT_00s0372g00060.t01	Wine grape	cytosol	14.4	40.11
AT4G16740.1	Thale cress	mitochondrion	43.19	39.82
VIT_00s0361g00060.t01	Wine grape	cytosol	43.19	39.75
CDX76827	Canola	plastid	42.03	39.18
CDX83558	Canola	plastid	44.15	39.05
CDY13587	Canola	plastid	44.15	39.05
AT3G25820.1	Thale cress	plastid	44.91	39.0
AT3G25830.1	Thale cress	plastid	44.91	39.0
AT4G16730.1	Thale cress	cytosol	40.31	38.96
VIT_00s0392g00030.t01	Wine grape	cytosol	23.61	38.8
VIT_12s0059g02720.t01	Wine grape	plastid	28.79	38.66
CDX90785	Canola	plastid	43.95	38.62
AT3G25810.1	Thale cress	plastid	44.15	38.46
VIT_00s0847g00020.t01	Wine grape	cytosol	30.33	38.44
AT2G24210.1	Thale cress	plastid	43.57	38.41
VIT_08s0007g06860.t01	Wine grape	plastid	20.92	37.98
CDY54750	Canola	cytosol	29.17	37.91
VIT_18s0001g04200.t01	Wine grape	cytosol	8.64	37.82
CDX83560	Canola	plastid	40.88	37.7
Bra000727.1-P	Field mustard	plastid	36.66	37.52
Bra038504.1-P	Field mustard	plastid	38.58	37.43
CDY53129	Canola	cytosol	18.23	37.11
CDY53648	Canola	cytosol	18.23	37.11
CDY62515	Canola	cytosol	28.41	36.91
VIT_12s0059g02710.t01	Wine grape	plastid	36.28	36.42
CDY13589	Canola	plastid	38.77	36.27
CDX83208	Canola	plastid	41.07	35.97
Bra000568.1-P	Field mustard	plastid	41.07	35.97
VIT_00s0271g00030.t01	Wine grape	cytosol	33.21	35.89
CDY21487	Canola	plastid	40.31	35.29
VIT_00s0392g00060.t01	Wine grape	cytosol	28.21	35.08
VIT_13s0067g00320.t01	Wine grape	cytosol	7.87	34.75
VIT_00s0385g00020.t01	Wine grape	cytosol	33.78	34.65
VIT_18s0001g04510.t01	Wine grape	plastid	20.15	34.31
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	32.25	34.29
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	44.34	33.82
VIT_00s0266g00010.t01	Wine grape	cytosol	32.82	33.73
VIT_00s0572g00010.t01	Wine grape	cytosol	28.98	33.56
VIT_00s0372g00040.t01	Wine grape	cytosol	32.63	33.53
VIT_00s0572g00020.t01	Wine grape	cytosol	32.63	33.53
VIT_00s0271g00010.t01	Wine grape	cytosol	31.48	33.33
VIT_12s0134g00140.t01	Wine grape	cytosol	18.62	33.22
VIT_00s0266g00020.t01	Wine grape	cytosol	30.71	32.85
VIT_12s0134g00090.t01	Wine grape	cytosol	18.23	32.31
GSMUA_Achr4P07690_001	Banana	cytosol	10.56	32.16
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	35.32	31.89
VIT_00s0372g00020.t01	Wine grape	cytosol	24.57	31.53
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	18.43	30.97
VIT_00s0266g00070.t01	Wine grape	cytosol	30.71	30.95
CDY68788	Canola	endoplasmic reticulum, golgi	24.57	30.48
CDY12909	Canola	cytosol	12.48	28.02
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	33.01	26.67
Bra027079.1-P	Field mustard	plastid	15.74	24.62
CDY61957	Canola	plastid	17.08	23.55
KRH22502	Soybean	cytosol	7.68	22.86
CDY12910	Canola	plastid	6.53	22.82
VIT_18s0001g05430.t01	Wine grape	cytosol	20.15	21.78
Bra025164.1-P	Field mustard	cytosol	44.34	21.75

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	ProteinID:CCB62567	ProteinID:CCB62567.1	UniProt:F6I6J9
EMBL:FN596756	GO:GO:0000287	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010333
GO:GO:0015074	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239	SUPFAM:SSF48576
InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00015CD850
ArrayExpress:VIT_13s0067g00130	EnsemblPlantsGene:VIT_13s0067g00130	EnsemblPlants:VIT_13s0067g00130.t01	RefSeq:XP_003634881	RefSeq:XP_003634881.1	RefSeq:XP_003634885
RefSeq:XP_003634885.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13_random:+:104751..107200

Molecular Weight (calculated)

60987.3 Da

IEP (calculated)

7.559

GRAVY (calculated)

-0.343

Length

521 amino acids

Sequence
(BLAST)

001: MALSMLASIP NLIIHTRLPI IIKSSSCKAS SPGIKFMIGN SNCEEIIVRR TANYQPTIWD YDYVQSLRSD YVGETYTRRL DKLKRYVKPM LGKVRKPLDQ
101: LELIDVLQRL GIYYHFKDEI KRILNSIYNQ YNQHEEWKKD DLYATALAFR LLRQHGYDVP QGVFSRFKDE TGSFKACLCE DVKGLLCLYE ASYLCVQGKS
201: TLEQARDFAY RHLGKALEQN IDQNLAIEVN QALELPLHWR MPRLEARWVI DVYEKRQDMN HILVELAKLD YNMVQATHQE ELRHMSSWWR STRLGEKLNF
301: ARDRLMESFL WTVGVIFEPQ YGYCRRMSTK VNTLVTIIDD VYDVYGTLDE LELFTDAVDR WDINAVDQLP KYMKLCFLAL YNSISEMAYD ALKEHGLHII
401: SYLRKAWADL CKSYLLEAKW YYNGYTPTLQ EYISNAWISI SGPLTLIHGY FFVANSITKE ASQSLQRYHS IIRWSSMILR LSDDLGTSLD ERKRGDVPKS
501: IQCHMYETGA SEEDARKHKA I

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.