Factsheet for Bra000727.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90785	Canola	plastid	100.0	85.83
Bra000568.1-P	Field mustard	plastid	80.35	68.74
AT2G24210.1	Thale cress	plastid	74.85	64.47
Bra025163.1-P	Field mustard	cytosol	57.96	52.68
VIT_13s0067g00300.t01	Wine grape	cytosol	16.31	52.53
PGSC0003DMT400055897	Potato	cytosol	11.79	49.59
Bra038504.1-P	Field mustard	plastid	49.9	47.3
Bra021082.1-P	Field mustard	cytosol	49.71	46.34
PGSC0003DMT400089009	Potato	cytosol	14.34	45.34
VIT_13s0067g00320.t01	Wine grape	cytosol	10.02	43.22
VIT_13s0067g03770.t01	Wine grape	cytosol	29.08	42.65
VIT_00s2271g00010.t01	Wine grape	cytosol	32.81	42.28
Solyc02g079840.1.1	Tomato	cytosol	42.83	40.52
VIT_13s0067g03700.t01	Wine grape	cytosol	44.79	40.28
VIT_00s0724g00010.t01	Wine grape	cytosol	33.79	40.28
VIT_13s0067g00090.t01	Wine grape	cytosol	27.5	40.0
VIT_13s0084g00010.t01	Wine grape	cytosol	42.83	39.56
VIT_13s0067g03830.t01	Wine grape	plastid	33.6	38.86
VIT_13s0067g03740.t01	Wine grape	cytosol	30.45	36.73
VIT_13s0067g00130.t01	Wine grape	plastid	37.52	36.66
VIT_13s0067g00370.t01	Wine grape	plastid	42.04	36.27
VIT_13s0067g03790.t01	Wine grape	plastid	42.24	36.26
VIT_13s0019g00060.t01	Wine grape	plastid	41.45	35.52
Bra025164.1-P	Field mustard	cytosol	61.1	29.28
Bra027609.1-P	Field mustard	cytosol	16.5	29.17
GSMUA_Achr4P07690_001	Banana	cytosol	9.23	27.49
KRH22502	Soybean	cytosol	9.23	26.86
Bra035927.1-P	Field mustard	mitochondrion, plastid	29.47	26.41
Bra012515.1-P	Field mustard	extracellular	12.77	26.32
Bra012955.1-P	Field mustard	plastid	28.88	24.54
Bra021566.1-P	Field mustard	plastid	23.97	24.02
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	25.93	23.61
Bra021564.1-P	Field mustard	plastid	27.5	23.22
Bra001557.1-P	Field mustard	plastid	27.31	23.01
Bra021560.1-P	Field mustard	plastid	26.92	22.76
Bra012513.1-P	Field mustard	cytosol	21.22	22.74
Bra002165.1-P	Field mustard	cytosol	24.16	22.12
Bra020921.1-P	Field mustard	cytosol	17.49	21.98
Bra027931.1-P	Field mustard	plastid	25.54	21.63
Bra002968.1-P	Field mustard	plastid	16.31	21.5
Bra002714.1-P	Field mustard	plastid	24.75	21.39
Bra039519.1-P	Field mustard	cytosol	23.18	21.18
Bra028251.1-P	Field mustard	cytosol	23.18	21.18
Bra020953.1-P	Field mustard	plastid	24.56	20.49
Bra001555.1-P	Field mustard	plastid	24.16	20.23
Bra027079.1-P	Field mustard	plastid	11.59	17.72

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	EnsemblPlantsGene:Bra000727	EnsemblPlants:Bra000727.1	EnsemblPlants:Bra000727.1-P
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4C949
PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239	SUPFAM:SSF48576
InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0002540369	:

Description

AT2G24210 (E=5e-178) TPS10 | TPS10 (terpene synthase 10); (E)-beta-ocimene synthase/ myrcene synthase

Coordinates

chrA03:+:12688423..12691442

Molecular Weight (calculated)

59955.6 Da

IEP (calculated)

5.824

GRAVY (calculated)

-0.459

Length

509 amino acids

Sequence
(BLAST)

001: MASLLQMGSP LIYRNSLVKR IQRPRSFTCT IVAKTTRADE SPVVLRRSAN YQPSLWDHHH LLSVENKYTK DESVHERDLL KENVRKMLND ERTTHLEQLE
101: LIDDLQKLGV SYHFEREIDN ILTFTYHKDR RNFVEYDMEY DLHATALEFR LLRQHGFNVP EDVFDVFMEN CGKFDSHDIN GLLSLYEASY LSTKSDTKLQ
201: KNVRVFATQQ LKNFVDTHGS KDLASCDVEM VVQALDMPYH WRMGRLATRW YIDMYGKRLH KNPMLLEFSK LDFNIVQAVY QEELKYVSSW WRETGLANQL
301: HFSRDRIVEN YFWTTGQIQE PQFGNVRRII TKVNALLTTI DDIYDIYGTL EELQLFTAAF ENWDVNRLDD LPEYMRLCFL VVYNEVNNIG CDILRNKDIN
401: VIPFLKKSDE MARGDVLKSI QCYMNETGVS EEKARMHVHK MINDMWDEMN YEKIENHSSL IPQDFAETVI NLARMSQCMY QYGDGHGCPE KSKVIDRVMS
501: VLFSPIPLD

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.