Factsheet for Bra021560.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39119	Canola	plastid	99.83	99.83
Bra021564.1-P	Field mustard	plastid	80.23	80.1
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	73.42	79.07
Bra021566.1-P	Field mustard	plastid	64.45	76.38
AT3G29410.1	Thale cress	plastid	71.1	70.98
Bra001555.1-P	Field mustard	plastid	59.63	59.05
Bra012955.1-P	Field mustard	plastid	57.81	58.1
Bra035927.1-P	Field mustard	mitochondrion, plastid	54.65	57.92
Bra001557.1-P	Field mustard	plastid	57.31	57.12
VIT_18s0001g04200.t01	Wine grape	cytosol	8.8	44.54
PGSC0003DMT400050941	Potato	cytosol	17.11	41.2
Bra027609.1-P	Field mustard	cytosol	19.6	40.97
Bra012513.1-P	Field mustard	cytosol	32.23	40.84
Bra028251.1-P	Field mustard	cytosol	36.54	39.5
PGSC0003DMT400075074	Potato	cytosol	13.62	39.42
Bra020921.1-P	Field mustard	cytosol	26.25	39.01
Bra012515.1-P	Field mustard	extracellular	15.95	38.87
Bra002165.1-P	Field mustard	cytosol	35.71	38.67
Bra027931.1-P	Field mustard	plastid	37.54	37.6
Bra039519.1-P	Field mustard	cytosol	34.22	36.98
Bra002714.1-P	Field mustard	plastid	35.88	36.67
PGSC0003DMT400070310	Potato	cytosol	18.77	36.33
Solyc01g101220.1.1	Tomato	cytosol	9.8	35.12
Bra002968.1-P	Field mustard	plastid	22.43	34.97
Solyc01g101190.2.1	Tomato	cytosol	31.89	34.78
PGSC0003DMT400079785	Potato	cytosol	17.94	34.73
VIT_18s0001g04510.t01	Wine grape	plastid	17.28	33.99
Bra020953.1-P	Field mustard	plastid	34.22	33.77
PGSC0003DMT400047124	Potato	cytosol	17.44	33.76
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	16.45	31.94
Os02t0458100-01	Rice	plastid	17.94	27.62
Bra000727.1-P	Field mustard	plastid	22.76	26.92
Bra038504.1-P	Field mustard	plastid	22.92	25.7
Bra021082.1-P	Field mustard	cytosol	23.26	25.64
Bra025163.1-P	Field mustard	cytosol	23.42	25.18
Bra000568.1-P	Field mustard	plastid	24.42	24.71
GSMUA_Achr6P24330_001	Banana	cytosol	5.65	24.11
GSMUA_Achr6P24340_001	Banana	cytosol	5.81	23.49
KRG93110	Soybean	mitochondrion	11.13	22.64
VIT_18s0001g05430.t01	Wine grape	cytosol	17.94	22.41
Bra027079.1-P	Field mustard	plastid	9.97	18.02
Bra025164.1-P	Field mustard	cytosol	23.42	13.28

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	EnsemblPlantsGene:Bra021560	EnsemblPlants:Bra021560.1	EnsemblPlants:Bra021560.1-P
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
UniProt:M4DYG4	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF22	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI000254436C	SEG:seg	:	:	:	:

Description

AT3G29410 (E=5e-243) | terpene synthase/cyclase family protein

Coordinates

chrA01:+:24497777..24500544

Molecular Weight (calculated)

69703.0 Da

IEP (calculated)

6.353

GRAVY (calculated)

-0.306

Length

602 amino acids

Sequence
(BLAST)

001: MEALKMCFGL KTLPNVHNGP LCHKTNLSLI PRRLLQNNTP FSKKPTKHLS WVKTESSGDL ESTRPLTYFS PSTWGDYFLS VPVDDSEFEA LEQEIESVMK
101: PEVRDILMCP HNNNKEKIRI IHLLISLAIA HYFGSEIEEI LHQAFLKLDD LISEENDLET IAIMFEVFRL YGHKMSCDVF ERFKGEDGKF MESLVHDVRG
201: MLQLYEAAHL GLPSEDIMDN ALTFTRHHLG LLTGQETSPN LCKQIQRALY RSRYNNIEIV VARQYISFYD QEEGHDKTLL KFAKLNFNFC QMHYIKELKL
301: ITKWWKDLGM ASQLSYIRDR SVEIYFGMLG MFFEPRYSLG RIHTVKLTMV LTVVDDTCDA YATLPEVISL HDAFQRWDLG ATEELPSYMR IIYQSVLDTF
401: EYIDREMKAR GKFGTMKPII DDTKNLLRLY AKTAKWARAG HVPSFEDYME VGISTAGLHG LSAYGYISMD DCDQRQLNEW FNSKPKIFKA LNTAFRLRND
501: IATFEQEVGR GEVANGVNCY MKQHGVTKEE AVEVLSKMER ENYKILREEF VVSKDVPRQI LLRPVNIARV LDSYYKDGDG FSHPDQNLKD LVTSLFLRPI
601: PL

Best Arabidopsis Sequence Match ( AT3G29410.1 )
(BLAST)

001: MEASKCFGPR TLPIIHNVPL CLKTNFSLFP CRLLQSQSLS SKKSTKHYLF RVKAETSGDL ESTRPLTYFS PSYWGDHFLS VSIDDSEFEA LEKEIETVFK
101: PKVRDMLMSP HSSDKERIRL IHLLISLGIA YYYENEIEEI LHKAYGKLAC LISDEDDLET IAIMFEVFRL YGHKMPCDVF ERFKSEDGKF KESLVGDVRG
201: LLQLYEAAHL GAPSEDIMDE ALSFARYHLE PLAGTETSSN LFKHVENVLY RARYHSIEIL VARQYISFYD QEEDQDETLL RFSKLNFNFC QMHYVKELKI
301: VTRWWKELGI ASKLPYSIRE RNVETYLGGL GVLFEPRYSL ARIFLAKLTL IMTVVDDTCD AYATLPEVQS LHDAFHRWDL RAMEELPRYM RIIYQSVFET
401: VEDIDREMIA RGKHGRLQLT IDEIKSLMIW YLGIAKWARS DQVPSFEDYM EIGTPSSALD DFASYGFIAM DDCDQKQLKE WFYSKPKIFH ALNALFRIRN
501: DIVTFEQEMS RGEVANGVNC YMKQHGVTKE AAVEELRKME RESYKIMIEE FMTSKAMPRQ ILVRPVNIAR VMDLFYKEAD GFGHPDQKLL QLIASLFLHP
601: IPL

Arabidopsis Description

TPS25Terpenoid synthase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.