Factsheet for AT3G29410.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39124	Canola	cytoskeleton, cytosol, plastid	67.33	72.63
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	67.0	72.27
Bra021566.1-P	Field mustard	plastid	60.86	72.24
Bra021564.1-P	Field mustard	plastid	71.81	71.81
Bra021560.1-P	Field mustard	plastid	70.98	71.1
CDY39119	Canola	plastid	70.98	71.1
CDY32356	Canola	plastid	72.14	70.16
AT3G14490.1	Thale cress	plastid	59.54	59.73
AT1G33750.1	Thale cress	mitochondrion, plastid	57.21	57.21
AT3G32030.1	Thale cress	plastid	57.21	57.12
AT3G14540.1	Thale cress	plastid	53.07	53.16
AT3G14520.1	Thale cress	plastid	53.23	53.06
AT1G31950.3	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole	53.4	52.96
VIT_18s0001g04200.t01	Wine grape	cytosol	8.29	42.02
PGSC0003DMT400075074	Potato	cytosol	14.26	41.35
PGSC0003DMT400050941	Potato	cytosol	16.92	40.8
AT5G44630.1	Thale cress	cytosol	37.31	40.4
AT4G13300.1	Thale cress	cytosol	34.99	38.09
AT5G48110.1	Thale cress	plastid	21.06	37.46
AT3G29110.1	Thale cress	plastid	36.65	37.14
AT1G66020.1	Thale cress	plastid	36.82	37.12
AT4G13280.2	Thale cress	cytosol	33.66	36.64
AT1G70080.1	Thale cress	mitochondrion	36.65	36.17
AT4G20210.1	Thale cress	plastid	35.66	35.83
AT1G48820.1	Thale cress	mitochondrion, plastid	33.17	35.65
AT1G48800.1	Thale cress	mitochondrion, plastid	35.49	35.49
AT4G15870.1	Thale cress	plastid	34.49	34.78
Solyc01g101220.1.1	Tomato	cytosol	9.62	34.52
AT3G29190.1	Thale cress	plastid	34.16	34.28
Solyc01g101190.2.1	Tomato	cytosol	31.34	34.24
AT4G20200.1	Thale cress	plastid	34.16	34.11
PGSC0003DMT400070310	Potato	cytosol	17.58	34.08
AT4G20230.2	Thale cress	plastid	34.33	33.44
PGSC0003DMT400047124	Potato	cytosol	17.25	33.44
PGSC0003DMT400079785	Potato	cytosol	17.25	33.44
AT2G23230.2	Thale cress	plastid	33.83	33.39
VIT_18s0001g04510.t01	Wine grape	plastid	16.92	33.33
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	16.42	31.94
Os02t0458100-01	Rice	plastid	17.58	27.11
AT2G24210.1	Thale cress	plastid	26.37	26.9
AT4G16730.1	Thale cress	cytosol	24.05	26.9
AT4G16740.1	Thale cress	mitochondrion	23.71	25.31
AT3G25810.1	Thale cress	plastid	24.88	25.08
AT3G25820.1	Thale cress	plastid	24.54	24.67
AT3G25830.1	Thale cress	plastid	24.54	24.67
KRG93110	Soybean	mitochondrion	12.11	24.66
GSMUA_Achr6P24330_001	Banana	cytosol	5.64	24.11
GSMUA_Achr6P24340_001	Banana	cytosol	5.8	23.49
AT1G61680.1	Thale cress	plastid	20.73	21.97
VIT_18s0001g05430.t01	Wine grape	cytosol	17.41	21.78

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:822602	MapMan:9.1.4.2	ProteinID:AEE77582.1	EMBL:AF497488
ArrayExpress:AT3G29410	EnsemblPlantsGene:AT3G29410	RefSeq:AT3G29410	TAIR:AT3G29410	RefSeq:AT3G29410-TAIR-G	EnsemblPlants:AT3G29410.1
TAIR:AT3G29410.1	Unigene:At.36922	ProteinID:BAB02588.1	EMBL:BX822709	ncoils:Coil	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0010333	GO:GO:0016114	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	RefSeq:NP_189587.1	PFAM:PF01397	PFAM:PF03936	PO:PO:0000263	PO:PO:0001078
PO:PO:0001081	PO:PO:0004507	PO:PO:0007611	PO:PO:0009005	PO:PO:0009009	PO:PO:0009010
PO:PO:0009046	PANTHER:PTHR31225	PANTHER:PTHR31225:SF22	UniProt:Q9LIA1	SUPFAM:SSF48239	SUPFAM:SSF48576
InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00000487A6
SEG:seg	:	:	:	:	:

Description

TPS25Terpenoid synthase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIA1]

Coordinates

chr3:-:11302431..11305198

Molecular Weight (calculated)

70228.6 Da

IEP (calculated)

5.732

GRAVY (calculated)

-0.241

Length

603 amino acids

Sequence
(BLAST)

001: MEASKCFGPR TLPIIHNVPL CLKTNFSLFP CRLLQSQSLS SKKSTKHYLF RVKAETSGDL ESTRPLTYFS PSYWGDHFLS VSIDDSEFEA LEKEIETVFK
101: PKVRDMLMSP HSSDKERIRL IHLLISLGIA YYYENEIEEI LHKAYGKLAC LISDEDDLET IAIMFEVFRL YGHKMPCDVF ERFKSEDGKF KESLVGDVRG
201: LLQLYEAAHL GAPSEDIMDE ALSFARYHLE PLAGTETSSN LFKHVENVLY RARYHSIEIL VARQYISFYD QEEDQDETLL RFSKLNFNFC QMHYVKELKI
301: VTRWWKELGI ASKLPYSIRE RNVETYLGGL GVLFEPRYSL ARIFLAKLTL IMTVVDDTCD AYATLPEVQS LHDAFHRWDL RAMEELPRYM RIIYQSVFET
401: VEDIDREMIA RGKHGRLQLT IDEIKSLMIW YLGIAKWARS DQVPSFEDYM EIGTPSSALD DFASYGFIAM DDCDQKQLKE WFYSKPKIFH ALNALFRIRN
501: DIVTFEQEMS RGEVANGVNC YMKQHGVTKE AAVEELRKME RESYKIMIEE FMTSKAMPRQ ILVRPVNIAR VMDLFYKEAD GFGHPDQKLL QLIASLFLHP
601: IPL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.