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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • cytosol 2
  • plastid 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400070310 Potato cytosol 87.78 87.78
Solyc01g101190.2.1 Tomato cytosol 85.53 48.19
CDY14934 Canola cytosol 2.25 43.75
PGSC0003DMT400075074 Potato cytosol 26.05 38.94
PGSC0003DMT400067594 Potato cytosol 27.33 34.98
PGSC0003DMT400047124 Potato cytosol 34.73 34.73
PGSC0003DMT400062798 Potato cytosol, mitochondrion 14.79 34.33
AT5G48110.1 Thale cress plastid 34.41 31.56
CDX95274 Canola cytosol 13.18 30.83
CDX75774 Canola cytosol, golgi, mitochondrion, plasma membrane 36.33 29.66
CDY71184 Canola cytosol 31.19 29.04
PGSC0003DMT400029354 Potato cytosol 26.69 29.02
PGSC0003DMT400029275 Potato cytosol 25.08 28.78
Bra020921.1-P Field mustard cytosol 31.51 24.2
CDY23121 Canola cytosol 28.62 23.42
Bra012513.1-P Field mustard cytosol 34.08 22.32
CDY06577 Canola cytosol 23.47 22.26
CDY69236 Canola cytosol 33.76 21.69
CDX82478 Canola cytosol 36.66 21.23
PGSC0003DMT400050941 Potato cytosol 16.72 20.8
PGSC0003DMT400089009 Potato cytosol 10.61 20.5
CDY02143 Canola plastid 36.33 20.43
CDY68962 Canola cytosol 32.8 20.24
Bra021566.1-P Field mustard plastid 32.48 19.88
CDX87217 Canola plastid 37.3 19.3
CDX98661 Canola cytosol 34.08 19.03
CDY27296 Canola cytosol 11.9 18.97
PGSC0003DMT400029266 Potato cytosol 25.4 18.94
CDX98470 Canola plastid 35.37 18.84
Bra021563.1-P Field mustard cytoskeleton, cytosol, plastid 33.76 18.78
CDY39124 Canola cytoskeleton, cytosol, plastid 33.76 18.78
Bra001555.1-P Field mustard plastid 36.66 18.75
Bra012955.1-P Field mustard plastid 36.01 18.7
Bra035927.1-P Field mustard mitochondrion, plastid 34.08 18.66
AT1G70080.1 Thale cress mitochondrion 36.66 18.66
AT3G32030.1 Thale cress plastid 36.01 18.54
CDX82475 Canola plastid 34.41 18.42
PGSC0003DMT400029265 Potato cytosol 30.23 18.32
AT3G14490.1 Thale cress plastid 35.05 18.14
AT3G14540.1 Thale cress plastid 35.05 18.11
AT3G14520.1 Thale cress plastid 35.05 18.02
Bra028251.1-P Field mustard cytosol 32.15 17.95
Bra021560.1-P Field mustard plastid 34.73 17.94
CDY39119 Canola plastid 34.41 17.77
AT1G31950.3 Thale cress cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole 34.73 17.76
Bra001557.1-P Field mustard plastid 34.41 17.72
Bra021564.1-P Field mustard plastid 34.08 17.58
CDX74453 Canola cytosol 29.9 17.51
Bra002165.1-P Field mustard cytosol 31.19 17.45
CDY63249 Canola cytosol 31.19 17.45
AT5G44630.1 Thale cress cytosol 31.19 17.41
CDX75776 Canola plastid 32.8 17.38
AT3G29410.1 Thale cress plastid 33.44 17.25
Bra039519.1-P Field mustard cytosol 30.87 17.24
AT1G48820.1 Thale cress mitochondrion, plastid 30.87 17.11
CDY13053 Canola extracellular 30.23 17.0
CDY41707 Canola plastid 31.51 16.84
AT3G29190.1 Thale cress plastid 32.48 16.81
AT4G13300.1 Thale cress cytosol 29.58 16.61
CDY49723 Canola plastid 31.51 16.44
AT4G13280.2 Thale cress cytosol 29.26 16.43
AT4G15870.1 Thale cress plastid 31.51 16.39
Bra027931.1-P Field mustard plastid 31.51 16.31
CDY32356 Canola plastid 32.48 16.29
CDX76471 Canola plastid 31.51 16.25
AT1G48800.1 Thale cress mitochondrion, plastid 31.51 16.25
AT1G33750.1 Thale cress mitochondrion, plastid 31.19 16.09
Bra002714.1-P Field mustard plastid 30.23 15.96
AT2G23230.2 Thale cress plastid 31.19 15.88
CDX76457 Canola plastid 30.55 15.81
CDY70719 Canola cytosol 17.68 15.8
AT1G66020.1 Thale cress plastid 30.23 15.72
CDY09324 Canola plastid 30.23 15.69
AT4G20230.2 Thale cress plastid 31.19 15.67
AT4G20200.1 Thale cress plastid 30.23 15.56
CDY42473 Canola cytosol 27.97 15.48
Bra020953.1-P Field mustard plastid 30.23 15.41
CDX98659 Canola plastid 30.55 15.37
PGSC0003DMT400015998 Potato plastid 28.62 15.32
CDY14933 Canola cytosol 23.47 14.96
AT3G29110.1 Thale cress plastid 28.3 14.79
AT4G20210.1 Thale cress plastid 28.3 14.67
CDY54565 Canola plastid 26.69 14.43
PGSC0003DMT400095524 Potato cytosol 18.65 13.18
CDX75775 Canola plastid 18.65 11.98
CDX95273 Canola plastid 16.08 11.93
Bra027609.1-P Field mustard cytosol 10.61 11.46
KRG93110 Soybean mitochondrion 10.29 10.81
Bra002968.1-P Field mustard plastid 9.65 7.77
VIT_18s0001g05430.t01 Wine grape cytosol 8.36 5.39
CDY67821 Canola cytosol 3.22 5.15
VIT_18s0001g05460.t01 Wine grape cytosol, mitochondrion 4.5 4.52
Bra012515.1-P Field mustard extracellular 3.22 4.05
PGSC0003DMT400055897 Potato cytosol 1.29 3.31
CDY18347 Canola cytosol 1.29 2.41
CDX82477 Canola plastid 2.25 2.33
VIT_18s0001g04510.t01 Wine grape plastid 1.93 1.96
VIT_18s0001g04200.t01 Wine grape cytosol 0.64 1.68
CDY09325 Canola plastid 0.64 0.74
CDY01639 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400079785EnsemblPlantsGene:PGSC0003DMG402031070Gene3D:1.10.600.10GO:GO:0000287GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0010333GO:GO:0016829InterPro:IPR008949InterPro:Isoprenoid_synthase_dom_sfInterPro:Terpene_cyclase_like_1_C
InterPro:Terpene_synthase_metal-bdPANTHER:PTHR31225PANTHER:PTHR31225:SF25PFAM:PF03936PGSC:PGSC0003DMG402031070SEG:seg
SUPFAM:SSF48576UniParc:UPI0002948FA8UniProt:M1D2F7MapMan:9.1.4.2::
Description
Vetispiradiene synthase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG402031070]
Coordinates
chr11:+:4060868..4063345
Molecular Weight (calculated)
36387.4 Da
IEP (calculated)
4.954
GRAVY (calculated)
-0.329
Length
311 amino acids
Sequence
(BLAST)
001: MLHKQELAEV SRWWKELDFV TTLPYARDRV VECYFWTIGV YFEPQYSQAR VMLTKTIAMV SIVDDTFDAY GTVKELEKYT DAIQRWDISE IDRLPDYMKI
101: SYKALLDLYK DYENELSNDG RSHVVYHAKE RMKEIVRNYN VEAKWFIEGY MPPVSEYLSN ALATSASYLL TTTSYLGMKS ATEHDFEWLS RNPQILKANA
201: TLCRVIDDIA TYEVEKSRGQ IATGIECYRR DYGVSTEEAM VKFNEMAEIA WKDLNEGILR PNHVSMEFLM RILNLARLID ITYKHNEDGY THPEKVLKPH
301: IVALLVDSIE I
Best Arabidopsis Sequence Match ( AT1G70080.1 )
(BLAST)
001: MEAITKYGSY FNVRFLSRLC WRLNLSSSYH YPLLKSSLSF SRFQSPKKLC LVRATTNPTD DNSTTRSFTP HPPSLWGHHF LSASVNQTEM DDLWRQIEAL
101: KPIVNAMLLP CNGADAKKIT CFIHTLVSLG VSYHFEEKIV EFLKDAFENI EDMIIDCKED DLYTVSIIFR VFRLYGHYIT PDIFNRFKGD DGNFKKCLND
201: DVRGMLSFYE ASHFGTTTED ILEEAMSFTQ KHLELFLVGE KAKHYPHITK LIQAALYIPQ NFNLEILVAR EYIDFYELET DHNEMLLKLA KLNFRFLQLQ
301: YIQDLKTLTT WWKELDLVSK IPVYFRERLA EPYFWATGIY YEPQYSAARI MLAKSIILVD IVDNTFDVYG TIDEVKSLVQ AIERWDSDAV DVLPDYLKVV
401: FRTTFDLFKE LEEYVSSEAR SFTMQYAYEQ LRILMKGYLQ EAEWSNRGHL PSHEEYIEVG VASTAGEVLL AMTFIPMGDA AGVGVYEWLR SRPKLTHALF
501: VKSRLRDDIA TYKEEMKRGD VCNGINCYTK QHKVSEEEAC IEFEKKTNHM SKVMNEEFLK AAKFIPLHIL RPVLNYGRLA DVCYKYGDGY TFAGEKIKDY
601: ITSLYVDLIT L
Arabidopsis Description
TPS06Terpenoid synthase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q84UU9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.