CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36347	Soybean	cytosol	30.74	40.62
KRG90197	Soybean	plastid	61.49	30.03
KRH38260	Soybean	plastid	59.12	29.07
KRH22499	Soybean	cytosol	22.3	28.95
KRH25425	Soybean	cytosol	35.81	28.19
PGSC0003DMT400050941	Potato	cytosol	19.93	23.6
VIT_18s0001g04200.t01	Wine grape	cytosol	8.78	21.85
KRH41974	Soybean	cytosol	21.28	21.65
KRH56086	Soybean	plastid	42.23	20.94
KRH25428	Soybean	plastid	41.22	20.27
KRH25917	Soybean	plastid	18.58	19.5
Os02t0458100-01	Rice	plastid	25.68	19.44
PGSC0003DMT400062798	Potato	cytosol, mitochondrion	8.78	19.4
PGSC0003DMT400047124	Potato	cytosol	19.26	18.33
CDY70719	Canola	cytosol	21.28	18.1
Bra027609.1-P	Field mustard	cytosol	17.23	17.71
VIT_18s0001g04510.t01	Wine grape	plastid	18.24	17.65
CDY18347	Canola	cytosol	9.8	17.47
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	18.24	17.42
PGSC0003DMT400075074	Potato	cytosol	11.82	16.83
CDY01639	Canola	cytosol	10.47	16.06
KRH22759	Soybean	cytosol	30.41	15.85
KRH21637	Soybean	cytosol	28.38	15.73
KRH49914	Soybean	plastid	30.41	15.71
CDY27296	Canola	cytosol	10.14	15.38
KRH26850	Soybean	nucleus, plastid	29.05	15.14
KRH22498	Soybean	plastid	29.39	15.03
CDX82477	Canola	plastid	15.2	15.0
Bra012515.1-P	Field mustard	extracellular	12.5	14.98
Solyc01g101220.1.1	Tomato	cytosol	8.45	14.88
Bra002968.1-P	Field mustard	plastid	19.26	14.77
CDX95273	Canola	plastid	20.61	14.56
KRH49915	Soybean	plastid	28.38	14.29
KRH26852	Soybean	plastid	28.04	14.21
Solyc01g101190.2.1	Tomato	cytosol	26.35	14.13
KRH55947	Soybean	cytosol	15.2	13.93
KRH26550	Soybean	cytosol	18.92	13.33
AT4G15870.1	Thale cress	plastid	26.69	13.21
CDY14933	Canola	cytosol	21.62	13.11
AT5G44630.1	Thale cress	cytosol	24.66	13.11
VIT_18s0001g05430.t01	Wine grape	cytosol	20.95	12.86
Bra035927.1-P	Field mustard	mitochondrion, plastid	24.32	12.68
CDX82478	Canola	cytosol	22.97	12.66
AT4G13280.2	Thale cress	cytosol	23.65	12.64
CDX74453	Canola	cytosol	22.64	12.62
CDX98661	Canola	cytosol	23.65	12.57
CDY68962	Canola	cytosol	20.95	12.3
Bra028251.1-P	Field mustard	cytosol	22.97	12.21
AT3G14490.1	Thale cress	plastid	24.66	12.15
AT1G70080.1	Thale cress	mitochondrion	25.0	12.11
AT3G29410.1	Thale cress	plastid	24.66	12.11
AT3G29110.1	Thale cress	plastid	24.32	12.1
AT4G13300.1	Thale cress	cytosol	22.64	12.09
Bra002165.1-P	Field mustard	cytosol	22.64	12.05
CDX87217	Canola	plastid	24.32	11.98
CDY67821	Canola	cytosol	7.77	11.86
Bra001555.1-P	Field mustard	plastid	24.32	11.84
AT1G33750.1	Thale cress	mitochondrion, plastid	23.99	11.77
CDX75776	Canola	plastid	23.31	11.75
CDY54565	Canola	plastid	22.64	11.65
Bra027931.1-P	Field mustard	plastid	23.65	11.65
CDX76457	Canola	plastid	23.65	11.65
AT2G23230.2	Thale cress	plastid	23.99	11.62
Bra021566.1-P	Field mustard	plastid	19.93	11.61
CDX75775	Canola	plastid	18.92	11.57
Bra012955.1-P	Field mustard	plastid	23.31	11.52
Bra039519.1-P	Field mustard	cytosol	21.62	11.49
CDX76471	Canola	plastid	23.31	11.44
CDY63249	Canola	cytosol	21.28	11.33
CDY23121	Canola	cytosol	14.53	11.32
AT4G20230.2	Thale cress	plastid	23.65	11.31
Bra001557.1-P	Field mustard	plastid	22.97	11.26
CDY42473	Canola	cytosol	21.28	11.21
AT1G66020.1	Thale cress	plastid	22.64	11.2
CDY09324	Canola	plastid	22.64	11.19
Bra021560.1-P	Field mustard	plastid	22.64	11.13
CDY39119	Canola	plastid	22.64	11.13
AT3G29190.1	Thale cress	plastid	22.3	10.98
AT1G48800.1	Thale cress	mitochondrion, plastid	22.3	10.95
AT1G48820.1	Thale cress	mitochondrion, plastid	20.61	10.87
CDX98659	Canola	plastid	22.64	10.84
Bra020953.1-P	Field mustard	plastid	22.3	10.82
AT3G32030.1	Thale cress	plastid	21.96	10.76
AT3G14520.1	Thale cress	plastid	21.96	10.74
CDY69236	Canola	cytosol	17.57	10.74
CDY09325	Canola	plastid	9.8	10.74
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	20.27	10.73
CDY02143	Canola	plastid	19.93	10.67
AT3G14540.1	Thale cress	plastid	21.62	10.63
PGSC0003DMT400070310	Potato	cytosol	11.15	10.61
CDY49723	Canola	plastid	21.28	10.57
CDY39124	Canola	cytoskeleton, cytosol, plastid	19.93	10.55
AT1G31950.3	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole	21.62	10.53
Bra002714.1-P	Field mustard	plastid	20.95	10.53
CDY32356	Canola	plastid	21.96	10.48
CDY41707	Canola	plastid	20.61	10.48
AT4G20210.1	Thale cress	plastid	20.95	10.33
PGSC0003DMT400079785	Potato	cytosol	10.81	10.29
CDX82475	Canola	plastid	19.93	10.15
CDY13053	Canola	extracellular	18.92	10.13
Bra020921.1-P	Field mustard	cytosol	13.85	10.12
Bra021564.1-P	Field mustard	plastid	20.61	10.12
Bra012513.1-P	Field mustard	cytosol	16.22	10.11
AT4G20200.1	Thale cress	plastid	20.27	9.93
AT5G48110.1	Thale cress	plastid	10.81	9.44
CDX98470	Canola	plastid	18.58	9.42
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	11.15	8.66
CDY06577	Canola	cytosol	9.46	8.54
CDY71184	Canola	cytosol	8.11	7.19
CDY14934	Canola	cytosol	0.34	6.25
KRH22502	Soybean	cytosol	3.04	5.14
CDX95274	Canola	cytosol	0.0	0.0
GSMUA_Achr6P24330_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P24340_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:50.4.2	UniProt:A0A0R0EGA8	EMBL:ACUP02012781	ncoils:Coil
EnsemblPlantsGene:GLYMA_20G248300	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
EnsemblPlants:KRG93110	ProteinID:KRG93110	ProteinID:KRG93110.1	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225
PANTHER:PTHR31225:SF5	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd
InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0006EDC521	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:47749084..47751418

Molecular Weight (calculated)

34028.1 Da

IEP (calculated)

8.445

GRAVY (calculated)

-0.323

Length

296 amino acids

Sequence
(BLAST)

001: MKLYCAVKRF VVTMGMKFDR QRSYTQSKNF ITQNNTPCPV ISACYNSRRS ANYQPNLWNF ELLVKMLEKR ASKLEEEVCE MINRAEKEPL SLLELIDNVQ
101: RLGLTGLHAT ALRFRLLRQH GFEVSQDVFE RSKDKDGELK GDVQGFLGLY EASFLGFEGE NLLDEAKWKH DGTLTNMSLP VATRTCNVGF QYGAIITPER
201: AAGTVKMGLP SKLEFVRDRL LKVYFWAPDP QFSECRKVVT KMFGLVTIID DVYDTYGYRW DVNSINTLPD YMKLCFLALN NTTYSILKEK GHNNLS

Best Arabidopsis Sequence Match ( AT4G16740.2 )
(BLAST)

001: MPKRQAQRRF TRKTDSKTPS QPLVSRRSAN YQPSLWQHEY LLSLGNTYVK EDNVERVTLL KQEVSKMLNE TEGLLEQLEL IDTLQRLGVS YHFEQEIKKT
101: LTNVHVKNVR AHKNRIDRNR WGDLYATALE FRLLRQHGFS IAQDVFDGNI GVDLDDKDIK GILSLYEASY LSTRIDTKLK ESIYYTTKRL RKFVEVNKNE
201: TKSYTLRRMV IHALEMPYHR RVGRLEARWY IEVYGERHDM NPILLELAKL DFNFVQAIHQ DELKSLSSWW SKTGLTKHLD FVRDRITEGY FSSVGVMYEP
301: EFAYHRQMLT KVFMLITTID DIYDIYGTLE ELQLFTTIVE KWDVNRLEEL PNYMKLCFLC LVNEINQIGY FVLRDKGFNV IPYLKESVRI LIILSM

Arabidopsis Description

TPS03Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A4FVP2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.