CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22498	Soybean	plastid	87.84	88.6
KRH26850	Soybean	nucleus, plastid	75.68	77.82
VIT_12s0134g00140.t01	Wine grape	cytosol	28.6	57.19
VIT_12s0134g00090.t01	Wine grape	cytosol	28.25	56.12
GSMUA_Achr11P...	Banana	cytosol	41.95	49.0
KRH36347	Soybean	cytosol	14.73	38.39
KRH41974	Soybean	cytosol	17.47	35.05
TraesCS2B01G064700.1	Wheat	cytosol, extracellular	10.96	34.78
KRH38260	Soybean	plastid	35.45	34.39
KRG90197	Soybean	plastid	35.27	33.99
KRH56086	Soybean	plastid	34.42	33.67
KRH25428	Soybean	plastid	34.42	33.39
KRH49914	Soybean	plastid	32.71	33.33
KRH22502	Soybean	cytosol	9.93	33.14
KRH21637	Soybean	cytosol	29.97	32.77
KRH49915	Soybean	plastid	32.02	31.8
KRH22499	Soybean	cytosol	12.33	31.58
KRH25425	Soybean	cytosol	20.03	31.12
KRH55947	Soybean	cytosol	16.78	30.34
KRH22759	Soybean	cytosol	29.45	30.28
KRH26550	Soybean	cytosol	21.06	29.29
KRH25917	Soybean	plastid	13.7	28.37
KRG93110	Soybean	mitochondrion	14.21	28.04

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:100806124	MapMan:9.1.4.2	EMBL:ACUP02007753	EnsemblPlantsGene:GLYMA_12G197500
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
UniProt:K7LVZ2	EnsemblPlants:KRH26852	ProteinID:KRH26852	ProteinID:KRH26852.1	PFAM:PF01397	PFAM:PF03936
PANTHER:PTHR31225	PANTHER:PTHR31225:SF11	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N
InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00023D0448	SEG:seg	:

Description

hypothetical protein

Coordinates

chr12:+:35869162..35874097

Molecular Weight (calculated)

67083.5 Da

IEP (calculated)

5.912

GRAVY (calculated)

-0.272

Length

584 amino acids

Sequence
(BLAST)

001: MSSNVMAITE LRVSSFTISL ASHNSRPSMY QPWNLSLQTS KPGMVPNKLS IKSVAFSEKV PSQTYYPGMK DFDQVKRKSQ EALLNSSDSL RTLEIIDTIQ
101: RLGIEHHFEK EINLQLGRIG DWNAAEDLFA TSLQFRLLRH YGWPTCSDVF NKFLDQSGNF KESVTRDIWG MLSLYEASYL GAKGEEVLQQ AMDYSRAHLC
201: QSLSDLSPKV GSIVVEALKL PRHLRMGRLE AKNFMVEYSQ ASNQIPALLE LARLDYDMIQ SMHQKELAEI SRWWKELGLI ERLGFGRDGP RECFLWVLGI
301: FPEPRYSNCR IELAKAICIL QVLDDMFDTY GTLDELILFT KAIKRWDLDV MEQLPEYMKI CYMALYNTTH EIAYKIQKDH GQTVVACLKR TWIDLIEAYL
401: KEAKWFNNKY VPTFQQYLDN GVISSGSYLA LVHASFLIGD DFSKETISMM NPPYPRLFSC SGEILRLWDD LGTSRDEQER GDNACSIQCL MTENNISDEN
501: VARRHIRKLI KNLWPELNGL SMTTTTTTLP LSVMRASLNM ARTSQVIYQH GDYQSMLTVD DHVQALLFTP SINYQDESDI NHVI

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.