CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22498	Soybean	plastid	77.82	76.34
KRH26852	Soybean	plastid	77.82	75.68
VIT_12s0134g00140.t01	Wine grape	cytosol	31.34	60.96
VIT_12s0134g00090.t01	Wine grape	cytosol	30.99	59.86
GSMUA_Achr11P...	Banana	cytosol	43.84	49.8
KRH36347	Soybean	cytosol	15.67	39.73
TraesCS2B01G064700.1	Wheat	cytosol, extracellular	12.15	37.5
KRH41974	Soybean	cytosol	18.49	36.08
KRH21637	Soybean	cytosol	32.92	35.02
KRH49914	Soybean	plastid	35.04	34.73
KRH56086	Soybean	plastid	35.74	34.0
KRG90197	Soybean	plastid	36.27	33.99
KRH49915	Soybean	plastid	35.04	33.84
KRH38260	Soybean	plastid	35.56	33.55
KRH25428	Soybean	plastid	35.21	33.22
KRH22499	Soybean	cytosol	13.2	32.89
KRH55947	Soybean	cytosol	18.66	32.82
KRH22502	Soybean	cytosol	10.04	32.57
KRH22759	Soybean	cytosol	31.34	31.34
KRH25425	Soybean	cytosol	20.42	30.85
KRH26550	Soybean	cytosol	22.71	30.71
KRG93110	Soybean	mitochondrion	15.14	29.05
KRH25917	Soybean	plastid	13.73	27.66

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:100807904	MapMan:9.1.4.2	EMBL:ACUP02007753	EnsemblPlantsGene:GLYMA_12G197400
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
UniProt:K7LVZ0	EnsemblPlants:KRH26850	ProteinID:KRH26850	ProteinID:KRH26850.1	PFAM:PF01397	PFAM:PF03936
PANTHER:PTHR31225	PANTHER:PTHR31225:SF11	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N
InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000233C437	:	:

Description

hypothetical protein

Coordinates

chr12:+:35854108..35858237

Molecular Weight (calculated)

65017.3 Da

IEP (calculated)

6.907

GRAVY (calculated)

-0.257

Length

568 amino acids

Sequence
(BLAST)

001: MSAHVMAVTG LRVSSFTSSL ASCPSIYQPW NLSLQTSKRG TIHNNLSIKC VAFNDNKVPS QIDLRTNNFE QVKRNSQMAL LNSSDPIKIL KMIDTIQRLG
101: IEHHFKEEIN VQLGKLGDWD VTQDLFGTAL QFRLQRHNGW PSCSDVFKKF LDKSGTFKES ITNDIWGMLS LYEASYLGAK GEEVLQQAMD FSKAHLHQSL
201: PHLSPELRKL VAKALTLPRH LRMGRLEARN YMEKYSQATN QIPALMELAK LDFAMVQSMH QKELAEISRW WKNLGLVERL GFARDRPAEC FLWTVGTFPE
301: PRYSNCRIEL TKTICILLVM DDIFDTYGTL EELVLFTEAI KRWDLDAMEQ LPEYMKICYM ALFNTTHEIA YKIQKEHGQT VVACLKRTWI DIFEAFLKEA
401: KWFNNGYIPT FKEYLDNGVI SSGSYMALVH ATFLIGDSLS KETISIMKPY PRLFSCSGEI LRLWDDLGTS REEQERGDNA CSIQCLMTEN NLSDENVARK
501: HIRQLIQNLW PELNGLAMTT TALPSSVMKA SLNMARTAQV IYQHGDDQNT FTVDDYVKTL ILTPSSNY

Best Arabidopsis Sequence Match ( AT4G16730.1 )
(BLAST)

001: MGSSISPLAR EYIYVKEVET AEKAILFKEE VRKTLNEIEG SIEQLEMIDS LQRLGISYHY KHEIHDILRK IHDQHGEIER ETQDLHATSL EFILLRQHGF
101: DVSQDAFDVF ISETGEFRKT LHSDIKGLLS LYEASYFSMD SEFKLKETRI YANKRLSEFV AESSKTICRE DETYILEMVK RALETPYHWS IRRLEARWYI
201: NVYEKKHEMN PLLLEFAAID FNMLQANHQE ELKLISSWWN STGLMKQLDF VRDRITESYF WTIGIFYEPE FKYCRKILTK IFMLIVIMDD IYDIYGTLEE
301: LELFTNVVEK WDVNHVERLP NYMRMCFLFL YNEINQIGYD VLRDKGLNVI PYLKQVWTDL FKTFLTESKW YKTGHKPSFE EYMQNGVISS SVPTILLHLF
401: SVLSDHISDQ TLTDDSKNHS VVRSCATILR LANDLATSTE EMARGDSPKS VQCYMYETRA SEEEARRHMQ SMISDSWDII NSDLKTAHTS SLPRGFLAAA
501: ANLNRVVQCI YRHGDGHGSP EKTKTVDYIQ SVLFNPVPL

Arabidopsis Description

TPS02terpene synthase 02 [Source:TAIR;Acc:AT4G16730]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.