CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g00320.t01	Wine grape	cytosol	24.0	35.59
GSMUA_Achr4P07690_001	Banana	cytosol	25.14	25.73
CDY53129	Canola	cytosol	26.29	17.97
CDY53648	Canola	cytosol	26.29	17.97
VIT_13s0067g03770.t01	Wine grape	cytosol	32.0	16.14
VIT_13s0067g00090.t01	Wine grape	cytosol	30.86	15.43
VIT_00s2271g00010.t01	Wine grape	cytosol	33.14	14.68
VIT_13s0067g03740.t01	Wine grape	cytosol	31.43	13.03
CDY66920	Canola	cytosol	24.57	12.99
KRH55947	Soybean	cytosol	22.86	12.38
Solyc02g079840.1.1	Tomato	cytosol	37.14	12.08
CDY62515	Canola	cytosol	27.43	11.97
CDY54750	Canola	cytosol	27.43	11.97
VIT_13s0067g03700.t01	Wine grape	cytosol	37.71	11.66
VIT_13s0084g00010.t01	Wine grape	cytosol	34.86	11.07
CDY12909	Canola	cytosol	14.29	10.78
KRG90197	Soybean	plastid	37.14	10.73
KRH38260	Soybean	plastid	35.43	10.3
KRH56086	Soybean	plastid	34.86	10.22
VIT_13s0067g00370.t01	Wine grape	plastid	34.29	10.17
AT4G16740.1	Thale cress	mitochondrion	32.57	10.09
Bra021082.1-P	Field mustard	cytosol	31.43	10.07
KRH26850	Soybean	nucleus, plastid	32.57	10.04
KRH22498	Soybean	plastid	33.14	10.02
KRH26852	Soybean	plastid	33.14	9.93
CDY13589	Canola	plastid	31.43	9.87
VIT_13s0067g03790.t01	Wine grape	plastid	33.14	9.78
Bra038504.1-P	Field mustard	plastid	29.71	9.68
KRH22759	Soybean	cytosol	31.43	9.68
CDX76827	Canola	plastid	30.86	9.66
AT4G16730.1	Thale cress	cytosol	29.71	9.65
CDX83560	Canola	plastid	30.86	9.56
KRH25428	Soybean	plastid	32.57	9.47
VIT_13s0019g00060.t01	Wine grape	plastid	32.0	9.43
VIT_00s0724g00010.t01	Wine grape	cytosol	22.86	9.37
KRH26550	Soybean	cytosol	22.29	9.29
Bra000727.1-P	Field mustard	plastid	26.86	9.23
AT3G25810.1	Thale cress	plastid	31.43	9.2
AT3G25820.1	Thale cress	plastid	30.86	9.0
AT3G25830.1	Thale cress	plastid	30.86	9.0
AT2G24210.1	Thale cress	plastid	30.29	8.97
CDX90785	Canola	plastid	30.29	8.94
Bra025163.1-P	Field mustard	cytosol	28.0	8.75
PGSC0003DMT400089009	Potato	cytosol	8.0	8.7
CDY21487	Canola	plastid	29.14	8.57
CDX83558	Canola	plastid	28.57	8.49
CDY13587	Canola	plastid	28.57	8.49
CDX83208	Canola	plastid	28.0	8.24
Bra000568.1-P	Field mustard	plastid	28.0	8.24
KRH21637	Soybean	cytosol	24.57	8.05
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	30.29	7.76
VIT_13s0067g00130.t01	Wine grape	plastid	22.86	7.68
VIT_13s0067g00300.t01	Wine grape	cytosol	6.86	7.59
KRH49915	Soybean	plastid	25.14	7.48
KRH36347	Soybean	cytosol	9.14	7.14
KRH49914	Soybean	plastid	21.71	6.63
Bra027079.1-P	Field mustard	plastid	10.29	5.41
KRH22499	Soybean	cytosol	6.86	5.26
Bra025164.1-P	Field mustard	cytosol	30.29	4.99
PGSC0003DMT400055897	Potato	cytosol	3.43	4.96
KRH25425	Soybean	cytosol	10.29	4.79
CDY68676	Canola	cytosol	9.71	4.52
VIT_13s0067g03830.t01	Wine grape	plastid	10.86	4.32
KRH41974	Soybean	cytosol	6.29	3.78
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	4.57	3.19
CDY68788	Canola	endoplasmic reticulum, golgi	7.43	3.1
KRG93110	Soybean	mitochondrion	5.14	3.04
CDY61957	Canola	plastid	5.71	2.65
KRH25917	Soybean	plastid	3.43	2.13
CDY12910	Canola	plastid	0.57	0.67

Protein Annotations

EMBL:ACUP02008416	EnsemblPlants:KRH22502	EnsemblPlantsGene:GLYMA_13G304800	Gene3D:1.10.600.10	GO:GO:0000287	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:Isoprenoid_synthase_dom_sf
InterPro:Terpene_synthase_metal-bd	PANTHER:PTHR31225	PANTHER:PTHR31225:SF5	PFAM:PF03936	ProteinID:KRH22502	ProteinID:KRH22502.1
SUPFAM:SSF48576	UniParc:UPI00023CF06D	UniProt:K7M2U3	MapMan:50.4.2	:	:

Description

hypothetical protein

Coordinates

chr13:+:40161768..40162729

Molecular Weight (calculated)

20015.1 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.358

Length

175 amino acids

Sequence
(BLAST)

001: MVSQQQSDST IQRVPQKWID LVRRWGCSRS LLLLIVCQDQ DVTEQALHSL ANYHDFLRPA MIILRLCDDL GTSTDEMKMG EISTSIASYM HENGLSEEKV
101: HQYFKTLIDK EWQYLNKGQV MGSTLSKSVI QVAIDLGRTA RYTYQCGDGI GRQDGITKRR MKLWLVDPVE VNEAS

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.