CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000727.1-P	Field mustard	plastid	85.83	100.0
CDX83208	Canola	plastid	79.76	79.5
CDY21487	Canola	plastid	78.92	78.66
AT2G24210.1	Thale cress	plastid	76.9	77.16
CDY68788	Canola	endoplasmic reticulum, golgi	53.96	76.19
CDX76827	Canola	plastid	62.56	66.37
CDY66920	Canola	cytosol	36.93	66.16
CDX83560	Canola	plastid	59.7	62.65
CDY13587	Canola	plastid	62.23	62.65
CDX83558	Canola	plastid	62.06	62.48
CDY13589	Canola	plastid	57.5	61.22
CDY53129	Canola	cytosol	24.28	56.25
CDY53648	Canola	cytosol	24.28	56.25
CDY68676	Canola	cytosol	35.24	55.59
VIT_13s0067g03770.t01	Wine grape	cytosol	31.87	54.47
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	62.56	54.32
CDY15827	Canola	cytosol	14.17	54.19
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	22.26	52.59
VIT_13s0067g00300.t01	Wine grape	cytosol	14.0	52.53
CDY54750	Canola	cytosol	35.08	51.87
VIT_13s0067g00090.t01	Wine grape	cytosol	30.52	51.71
CDY62515	Canola	cytosol	34.06	50.37
VIT_00s0724g00010.t01	Wine grape	cytosol	35.75	49.65
PGSC0003DMT400055897	Potato	cytosol	10.12	49.59
VIT_00s2271g00010.t01	Wine grape	cytosol	32.55	48.86
VIT_13s0067g00320.t01	Wine grape	cytosol	9.61	48.31
VIT_13s0067g03700.t01	Wine grape	cytosol	45.36	47.53
Solyc02g079840.1.1	Tomato	cytosol	42.66	47.03
VIT_13s0084g00010.t01	Wine grape	cytosol	43.51	46.82
VIT_13s0067g03740.t01	Wine grape	cytosol	33.22	46.68
GSMUA_Achr4P07690_001	Banana	cytosol	13.15	45.61
PGSC0003DMT400089009	Potato	cytosol	12.31	45.34
VIT_13s0067g00130.t01	Wine grape	plastid	38.62	43.95
VIT_13s0067g03790.t01	Wine grape	plastid	43.0	43.0
VIT_13s0067g00370.t01	Wine grape	plastid	42.5	42.71
VIT_13s0019g00060.t01	Wine grape	plastid	42.5	42.42
VIT_13s0067g03830.t01	Wine grape	plastid	29.17	39.32
CDY14934	Canola	cytosol	0.84	31.25
KRH22502	Soybean	cytosol	8.94	30.29
CDX87217	Canola	plastid	29.17	28.79
CDY68962	Canola	cytosol	24.28	28.57
CDY18347	Canola	cytosol	7.93	28.31
CDY39124	Canola	cytoskeleton, cytosol, plastid	26.48	28.09
CDY02143	Canola	plastid	25.97	27.85
CDY69236	Canola	cytosol	22.6	27.69
CDX75776	Canola	plastid	26.48	26.75
CDY12909	Canola	cytosol	10.46	26.72
CDX98661	Canola	cytosol	24.79	26.39
CDY70719	Canola	cytosol	15.35	26.15
CDX98470	Canola	plastid	25.63	26.03
CDY39119	Canola	plastid	26.31	25.91
CDY27296	Canola	cytosol	8.43	25.64
CDX95274	Canola	cytosol	5.73	25.56
CDY12910	Canola	plastid	6.41	25.5
CDX82475	Canola	plastid	24.96	25.47
CDX82478	Canola	cytosol	22.93	25.33
CDY32356	Canola	plastid	26.48	25.32
CDY13053	Canola	extracellular	23.44	25.14
CDX76457	Canola	plastid	25.46	25.12
CDX95273	Canola	plastid	17.71	25.06
CDY63249	Canola	cytosol	23.44	25.0
CDY49723	Canola	plastid	25.13	25.0
CDY41707	Canola	plastid	24.11	24.57
CDY71184	Canola	cytosol	13.83	24.55
CDX98659	Canola	plastid	25.3	24.27
CDY14933	Canola	cytosol	19.9	24.18
CDX74453	Canola	cytosol	21.42	23.92
CDX76471	Canola	plastid	24.28	23.88
CDY09324	Canola	plastid	24.11	23.87
CDY06577	Canola	cytosol	13.15	23.78
CDY42473	Canola	cytosol	22.26	23.49
CDX82477	Canola	plastid	11.8	23.33
CDY67821	Canola	cytosol	7.59	23.2
CDY54565	Canola	plastid	22.43	23.13
CDY61957	Canola	plastid	14.67	23.02
CDY23121	Canola	cytosol	14.33	22.37
CDY09325	Canola	plastid	9.95	21.85
CDY01639	Canola	cytosol	7.08	21.76
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	13.49	21.0
CDX75775	Canola	plastid	15.18	18.59

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:A0A078DNJ5	EnsemblPlants:CDX90785	ProteinID:CDX90785
ProteinID:CDX90785.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00151483001	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0004EDD522	:	:	:	:	:

Description

BnaA03g24650D

Coordinates

chrLK031864:-:512189..515539

Molecular Weight (calculated)

69622.1 Da

IEP (calculated)

5.693

GRAVY (calculated)

-0.390

Length

593 amino acids

Sequence
(BLAST)

001: MASLLQMGSP LIYRNSLVKR IQRPRSFTCT IVAKTTRADE SPVVLRRSAN YQPSLWDHHH LLSVENKYTK DESVHERDLL KENVRKMLND ERTTHLEQLE
101: LIDDLQKLGV SYHFEREIDN ILTFTYHKDR RNFVEYDMEY DLHATALEFR LLRQHGFNVP EDVFDVFMEN CGKFDSHDIN GLLSLYEASY LSTKSDTKLQ
201: KNVRVFATQQ LKNFVDTHGS KDLASCDVEM VVQALDMPYH WRMGRLATRW YIDMYGKRLH KNPMLLEFSK LDFNIVQAVY QEELKYVSSW WRETGLANQL
301: HFSRDRIVEN YFWTTGQIQE PQFGNVRRII TKVNALLTTI DDIYDIYGTL EELQLFTAAF ENWDVNRLDD LPEYMRLCFL VVYNEVNNIG CDILRNKDIN
401: VIPFLKKSWA DVCKAYLVEA MWYKGGYKPN LEEYMQNAWI SISSPTIFVH FYCVFSDQLS VQVLETLSEH QQNIVRCSSS VFRLANDLVT SPDEMARGDV
501: LKSIQCYMNE TGVSEEKARM HVHKMINDMW DEMNYEKIEN HSSLIPQDFA ETVINLARMS QCMYQYGDGH GCPEKSKVID RVMSVLFSPI PLD

Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)

001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D

Arabidopsis Description

TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.