Factsheet for VIT_00s0724g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
vacuole 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
BaCelLo:	cytosol
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g00300.t01	Wine grape	cytosol	32.08	86.71
VIT_00s2271g00010.t01	Wine grape	cytosol	72.13	77.97
VIT_13s0067g00090.t01	Wine grape	cytosol	58.08	70.86
VIT_13s0084g00010.t01	Wine grape	cytosol	89.7	69.51
VIT_13s0067g00130.t01	Wine grape	plastid	84.54	69.29
VIT_13s0067g00370.t01	Wine grape	plastid	89.7	64.92
VIT_13s0067g03770.t01	Wine grape	cytosol	51.99	63.98
VIT_13s0067g03740.t01	Wine grape	cytosol	58.31	59.0
VIT_13s0067g03700.t01	Wine grape	cytosol	75.18	56.71
PGSC0003DMT400089009	Potato	cytosol	20.14	53.42
VIT_12s0134g00040.t01	Wine grape	mitochondrion	26.93	51.34
VIT_13s0019g00060.t01	Wine grape	plastid	70.73	50.84
PGSC0003DMT400055897	Potato	cytosol	14.29	50.41
VIT_13s0067g03790.t01	Wine grape	plastid	69.79	50.25
VIT_13s0067g03830.t01	Wine grape	plastid	51.52	50.0
VIT_00s0372g00060.t01	Wine grape	cytosol	18.97	43.32
Solyc01g105960.2.1	Tomato	cytosol	35.83	43.22
CDY66920	Canola	cytosol	32.55	41.99
VIT_18s0001g04200.t01	Wine grape	cytosol	11.24	40.34
CDY54750	Canola	cytosol	37.47	39.9
CDY62515	Canola	cytosol	36.53	38.9
VIT_12s0134g00030.t01	Wine grape	mitochondrion	52.46	38.69
CDY68676	Canola	cytosol	33.72	38.3
VIT_12s0134g00020.t01	Wine grape	plastid	53.86	38.27
AT4G16730.1	Thale cress	cytosol	48.24	38.22
VIT_00s0392g00030.t01	Wine grape	cytosol	28.34	38.17
Bra025163.1-P	Field mustard	cytosol	49.41	37.68
CDY53129	Canola	cytosol	22.48	37.5
CDY53648	Canola	cytosol	22.48	37.5
CDX76827	Canola	plastid	48.01	36.67
VIT_00s0847g00020.t01	Wine grape	cytosol	35.13	36.5
Bra021082.1-P	Field mustard	cytosol	46.37	36.26
CDX83560	Canola	plastid	47.54	35.93
VIT_00s0271g00030.t01	Wine grape	cytosol	40.52	35.89
AT3G25830.1	Thale cress	plastid	50.35	35.83
AT3G25820.1	Thale cress	plastid	50.35	35.83
CDY13587	Canola	plastid	49.41	35.82
CDX83558	Canola	plastid	49.41	35.82
AT4G16740.1	Thale cress	mitochondrion	47.31	35.75
CDX90785	Canola	plastid	49.65	35.75
AT3G25810.1	Thale cress	plastid	49.65	35.45
AT2G24210.1	Thale cress	plastid	48.95	35.36
VIT_00s0361g00060.t01	Wine grape	cytosol	46.37	34.98
VIT_12s0134g00140.t01	Wine grape	cytosol	23.65	34.59
Bra038504.1-P	Field mustard	plastid	43.33	34.45
VIT_00s0271g00010.t01	Wine grape	cytosol	39.34	34.15
Bra000727.1-P	Field mustard	plastid	40.28	33.79
VIT_00s0266g00020.t01	Wine grape	cytosol	38.41	33.68
VIT_12s0134g00090.t01	Wine grape	cytosol	23.18	33.67
GSMUA_Achr4P07690_001	Banana	cytosol	13.35	33.33
VIT_00s0385g00020.t01	Wine grape	cytosol	39.34	33.07
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	19.44	33.07
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	37.94	33.06
CDY13589	Canola	plastid	42.86	32.85
Bra000568.1-P	Field mustard	plastid	45.67	32.77
CDX83208	Canola	plastid	45.67	32.77
VIT_00s0372g00020.t01	Wine grape	cytosol	31.15	32.76
VIT_00s0572g00010.t01	Wine grape	cytosol	34.43	32.67
VIT_12s0059g02720.t01	Wine grape	plastid	29.27	32.22
CDY21487	Canola	plastid	44.73	32.1
VIT_12s0059g02710.t01	Wine grape	plastid	38.88	31.98
VIT_00s0572g00020.t01	Wine grape	cytosol	37.94	31.95
VIT_00s0266g00010.t01	Wine grape	cytosol	37.94	31.95
VIT_00s0372g00040.t01	Wine grape	cytosol	37.7	31.76
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	50.59	31.63
VIT_00s0266g00070.t01	Wine grape	cytosol	38.17	31.53
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	41.45	30.68
VIT_08s0007g06860.t01	Wine grape	plastid	20.14	29.97
VIT_13s0067g00320.t01	Wine grape	cytosol	8.2	29.66
VIT_00s0392g00060.t01	Wine grape	cytosol	28.1	28.64
CDY12909	Canola	cytosol	15.22	28.02
VIT_18s0001g04510.t01	Wine grape	plastid	19.67	27.45
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	19.2	26.45
CDY68788	Canola	endoplasmic reticulum, golgi	25.76	26.19
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	37.47	24.81
KRH22502	Soybean	cytosol	9.37	22.86
Bra027079.1-P	Field mustard	plastid	17.56	22.52
CDY61957	Canola	plastid	19.2	21.69
Bra025164.1-P	Field mustard	cytosol	50.59	20.34
VIT_18s0001g05430.t01	Wine grape	cytosol	21.78	19.29
CDY12910	Canola	plastid	6.56	18.79

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	ProteinID:CCB48416	ProteinID:CCB48416.1	UniProt:F6H873
EMBL:FN595275	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI000210A6B6	ArrayExpress:VIT_00s0724g00010	EnsemblPlantsGene:VIT_00s0724g00010	EnsemblPlants:VIT_00s0724g00010.t01	RefSeq:XP_002274794	RefSeq:XP_002274794.2

Description

No Description!

Coordinates

chrUn:-:34674935..34677235

Molecular Weight (calculated)

50662.7 Da

IEP (calculated)

5.063

GRAVY (calculated)

-0.318

Length

427 amino acids

Sequence
(BLAST)

001: ALDQLELIDV LRRLGLYYHF KDEIKRILDI IYNRYNQHEE WKKDDLYATA LEFRLLRQHG YDVPEDVFSR FKDETGSFKA CLCEDMRGML CLYEASYICV
101: QGESTLEQAR DFAHRHLGKG LEQNIDQNLA IEVNHALELP LHWRMPRLEA RWFIDVYEKR QDLNPILLEF AKLDFNMLQA THQEDLRHMF SWWRSTRLGE
201: KLKFARDRLV ENFLWTVGEI FEPQYGYYRR MSTKVNTLKT IIDDVYDVYG TLDELELFTD AVDRWDINAM DPLPEYMKMC FLALYNSTNE MAYDALKEHG
301: LHIIFYLRKV WADLCKSYLL EAKWYYSGYT PSLQEYISNS WISISGPVIL VHAYFLVANP ITKEALQSVE RYHNIIRWSS MILRLSDDLG TSLDELKRGD
401: VPKSIQCYMY ETGASEVMLV SQLYLEG

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.