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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G25820.1 Thale cress plastid 78.26 78.0
AT3G25830.1 Thale cress plastid 78.26 78.0
CDX83560 Canola plastid 70.57 74.69
CDY13589 Canola plastid 68.9 73.97
CDY13590 Canola endoplasmic reticulum, extracellular, plastid 72.91 63.84
AT2G24210.1 Thale cress plastid 61.54 62.27
VIT_13s0067g03770.t01 Wine grape cytosol 33.11 57.06
AT4G16740.1 Thale cress mitochondrion 53.18 56.28
VIT_13s0067g00090.t01 Wine grape cytosol 32.27 55.14
VIT_13s0067g00300.t01 Wine grape cytosol 14.55 55.06
VIT_13s0067g00320.t01 Wine grape cytosol 10.54 53.39
AT4G16730.1 Thale cress cytosol 46.99 52.13
VIT_00s2271g00010.t01 Wine grape cytosol 32.94 49.87
VIT_00s0724g00010.t01 Wine grape cytosol 35.45 49.65
VIT_13s0067g03700.t01 Wine grape cytosol 46.15 48.76
VIT_13s0084g00010.t01 Wine grape cytosol 44.48 48.28
VIT_13s0067g03740.t01 Wine grape cytosol 33.95 48.1
Solyc02g079840.1.1 Tomato cytosol 41.64 46.28
VIT_13s0067g00370.t01 Wine grape plastid 44.31 44.92
GSMUA_Achr4P07690_001 Banana cytosol 12.71 44.44
VIT_13s0067g00130.t01 Wine grape plastid 38.46 44.15
PGSC0003DMT400089009 Potato cytosol 11.87 44.1
VIT_13s0067g03790.t01 Wine grape plastid 42.98 43.34
VIT_13s0019g00060.t01 Wine grape plastid 42.98 43.27
Bra025164.1-P Field mustard cytosol 72.91 41.05
VIT_13s0067g03830.t01 Wine grape plastid 28.6 38.86
PGSC0003DMT400055897 Potato cytosol 7.36 36.36
KRH22502 Soybean cytosol 9.2 31.43
AT1G61680.1 Thale cress plastid 27.59 29.0
AT5G48110.1 Thale cress plastid 15.89 28.02
AT1G70080.1 Thale cress mitochondrion 27.42 26.84
AT3G14520.1 Thale cress plastid 26.09 25.79
AT3G14490.1 Thale cress plastid 25.75 25.62
AT3G14540.1 Thale cress plastid 25.25 25.08
AT3G29410.1 Thale cress plastid 25.08 24.88
AT5G44630.1 Thale cress cytosol 23.08 24.78
AT3G29110.1 Thale cress plastid 24.25 24.37
AT4G13280.2 Thale cress cytosol 22.41 24.19
AT3G29190.1 Thale cress plastid 24.25 24.13
AT3G32030.1 Thale cress plastid 24.25 24.01
AT4G13300.1 Thale cress cytosol 22.07 23.83
AT1G66020.1 Thale cress plastid 23.58 23.58
AT1G31950.3 Thale cress cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole 23.91 23.52
AT4G20210.1 Thale cress plastid 23.58 23.5
AT4G15870.1 Thale cress plastid 23.41 23.41
AT1G48820.1 Thale cress mitochondrion, plastid 21.91 23.35
AT4G20230.2 Thale cress plastid 24.08 23.26
AT1G33750.1 Thale cress mitochondrion, plastid 22.91 22.72
AT4G20200.1 Thale cress plastid 22.91 22.68
AT2G23230.2 Thale cress plastid 22.74 22.26
AT1G48800.1 Thale cress mitochondrion, plastid 21.74 21.56
Protein Annotations
Gene3D:1.10.600.10Gene3D:1.50.10.130EntrezGene:822173MapMan:9.1.4.2ProteinID:AEE77072.1EMBL:AF497484
ArrayExpress:AT3G25810EnsemblPlantsGene:AT3G25810RefSeq:AT3G25810TAIR:AT3G25810RefSeq:AT3G25810-TAIR-GEnsemblPlants:AT3G25810.1
TAIR:AT3G25810.1Unigene:At.37322ProteinID:BAA95770.1EMBL:BT053763GO:GO:0000287GO:GO:0003674
GO:GO:0003824GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009536GO:GO:0009987GO:GO:0010333GO:GO:0010334GO:GO:0016114GO:GO:0016829
GO:GO:0034002GO:GO:0034768GO:GO:0043693GO:GO:0046872GO:GO:0050550GO:GO:0050551
GO:GO:0050552GO:GO:0080015InterPro:IPR008949InterPro:IPR036965InterPro:Isoprenoid_synthase_dom_sfRefSeq:NP_189209.2
PFAM:PF01397PFAM:PF03936PO:PO:0000084PO:PO:0007611PO:PO:0007616PO:PO:0009029
PO:PO:0009031PO:PO:0009032PO:PO:0025022PO:PO:0025281PANTHER:PTHR31225PANTHER:PTHR31225:SF16
UniProt:Q9LRZ6SUPFAM:SSF48239SUPFAM:SSF48576InterPro:Terpene_cyclase_like_1_CInterPro:Terpene_synth_NInterPro:Terpene_synth_N_sf
InterPro:Terpene_synthase_metal-bdInterPro:Terpenoid_cyclase/PrenylTrfaseUniParc:UPI00000A4CD3SEG:seg::
Description
TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
Coordinates
chr3:+:9430762..9434000
Molecular Weight (calculated)
69815.8 Da
IEP (calculated)
6.122
GRAVY (calculated)
-0.326
Length
598 amino acids
Sequence
(BLAST)
001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.