Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0067g00300.t01 | Wine grape | cytosol | 35.19 | 87.97 |
| VIT_13s0067g00090.t01 | Wine grape | cytosol | 75.19 | 84.86 |
| VIT_13s0067g00320.t01 | Wine grape | cytosol | 24.81 | 83.05 |
| VIT_00s0724g00010.t01 | Wine grape | cytosol | 77.97 | 72.13 |
| VIT_13s0067g03770.t01 | Wine grape | cytosol | 62.78 | 71.47 |
| VIT_13s0084g00010.t01 | Wine grape | cytosol | 94.68 | 67.88 |
| VIT_13s0067g03740.t01 | Wine grape | cytosol | 68.1 | 63.74 |
| VIT_13s0067g00370.t01 | Wine grape | plastid | 92.15 | 61.69 |
| VIT_13s0067g00130.t01 | Wine grape | plastid | 72.15 | 54.7 |
| VIT_13s0067g03700.t01 | Wine grape | cytosol | 77.47 | 54.06 |
| PGSC0003DMT400055897 | Potato | cytosol | 16.46 | 53.72 |
| PGSC0003DMT400089009 | Potato | cytosol | 21.77 | 53.42 |
| CDY66920 | Canola | cytosol | 39.24 | 46.83 |
| VIT_13s0019g00060.t01 | Wine grape | plastid | 68.35 | 45.45 |
| VIT_13s0067g03790.t01 | Wine grape | plastid | 67.09 | 44.69 |
| CDY53648 | Canola | cytosol | 28.86 | 44.53 |
| CDY53129 | Canola | cytosol | 28.86 | 44.53 |
| VIT_00s0392g00030.t01 | Wine grape | cytosol | 34.94 | 43.53 |
| VIT_12s0134g00040.t01 | Wine grape | mitochondrion | 24.3 | 42.86 |
| CDY54750 | Canola | cytosol | 43.29 | 42.64 |
| CDY62515 | Canola | cytosol | 42.78 | 42.14 |
| GSMUA_Achr4P07690_001 | Banana | cytosol | 17.72 | 40.94 |
| VIT_18s0001g04200.t01 | Wine grape | cytosol | 12.15 | 40.34 |
| VIT_12s0134g00140.t01 | Wine grape | cytosol | 29.62 | 40.07 |
| VIT_13s0067g03830.t01 | Wine grape | plastid | 44.56 | 40.0 |
| VIT_12s0134g00090.t01 | Wine grape | cytosol | 29.11 | 39.12 |
| VIT_12s0134g00020.t01 | Wine grape | plastid | 56.46 | 37.1 |
| VIT_00s0372g00060.t01 | Wine grape | cytosol | 17.22 | 36.36 |
| VIT_12s0134g00030.t01 | Wine grape | mitochondrion | 53.16 | 36.27 |
| CDX83560 | Canola | plastid | 50.89 | 35.58 |
| AT4G16730.1 | Thale cress | cytosol | 47.85 | 35.06 |
| Bra025163.1-P | Field mustard | cytosol | 49.62 | 35.0 |
| VIT_00s0372g00020.t01 | Wine grape | cytosol | 35.95 | 34.98 |
| Solyc01g105960.2.1 | Tomato | cytosol | 30.63 | 34.18 |
| Bra021082.1-P | Field mustard | cytosol | 46.84 | 33.88 |
| CDX76827 | Canola | plastid | 47.59 | 33.63 |
| CDX83558 | Canola | plastid | 49.62 | 33.28 |
| CDY13587 | Canola | plastid | 49.62 | 33.28 |
| KRH22502 | Soybean | cytosol | 14.68 | 33.14 |
| AT3G25830.1 | Thale cress | plastid | 50.13 | 33.0 |
| AT3G25820.1 | Thale cress | plastid | 50.13 | 33.0 |
| VIT_00s0271g00030.t01 | Wine grape | cytosol | 40.25 | 32.99 |
| AT3G25810.1 | Thale cress | plastid | 49.87 | 32.94 |
| AT4G16740.1 | Thale cress | mitochondrion | 47.09 | 32.92 |
| AT2G24210.1 | Thale cress | plastid | 49.11 | 32.83 |
| Bra000727.1-P | Field mustard | plastid | 42.28 | 32.81 |
| VIT_12s0059g02710.t01 | Wine grape | plastid | 43.04 | 32.76 |
| CDX90785 | Canola | plastid | 48.86 | 32.55 |
| VIT_00s0361g00060.t01 | Wine grape | cytosol | 46.33 | 32.33 |
| VIT_00s0572g00010.t01 | Wine grape | cytosol | 36.71 | 32.22 |
| Bra038504.1-P | Field mustard | plastid | 43.8 | 32.22 |
| VIT_00s0271g00010.t01 | Wine grape | cytosol | 38.48 | 30.89 |
| CDY68676 | Canola | cytosol | 29.37 | 30.85 |
| Bra000568.1-P | Field mustard | plastid | 45.82 | 30.42 |
| CDX83208 | Canola | plastid | 45.82 | 30.42 |
| VIT_00s0266g00020.t01 | Wine grape | cytosol | 37.47 | 30.39 |
| CDY13589 | Canola | plastid | 42.53 | 30.16 |
| CDY21487 | Canola | plastid | 45.32 | 30.08 |
| VIT_00s0266g00010.t01 | Wine grape | cytosol | 37.47 | 29.19 |
| VIT_00s0372g00040.t01 | Wine grape | cytosol | 37.22 | 28.99 |
| VIT_00s0572g00020.t01 | Wine grape | cytosol | 37.22 | 28.99 |
| CDY13590 | Canola | endoplasmic reticulum, extracellular, plastid | 49.37 | 28.55 |
| VIT_00s0266g00070.t01 | Wine grape | cytosol | 36.96 | 28.24 |
| VIT_00s0271g00060.t01 | Wine grape | cytosol, plastid | 40.51 | 27.73 |
| VIT_00s0847g00020.t01 | Wine grape | cytosol | 28.35 | 27.25 |
| VIT_00s0392g00060.t01 | Wine grape | cytosol | 28.1 | 26.49 |
| VIT_00s0385g00020.t01 | Wine grape | cytosol | 33.42 | 25.98 |
| VIT_12s0059g02720.t01 | Wine grape | plastid | 25.06 | 25.52 |
| CDY12909 | Canola | cytosol | 14.94 | 25.43 |
| VIT_00s0385g00010.t01 | Wine grape | cytosol, plastid | 31.14 | 25.1 |
| VIT_00s0372g00070.t01 | Wine grape | cytosol, plasma membrane, plastid | 36.96 | 22.64 |
| CDY72187 | Canola | cytosol, mitochondrion, nucleus, plastid | 13.16 | 20.72 |
| VIT_08s0007g06860.t01 | Wine grape | plastid | 14.94 | 20.56 |
| Bra027079.1-P | Field mustard | plastid | 16.96 | 20.12 |
| VIT_18s0001g04510.t01 | Wine grape | plastid | 14.68 | 18.95 |
| CDY68788 | Canola | endoplasmic reticulum, golgi | 19.75 | 18.57 |
| Bra025164.1-P | Field mustard | cytosol | 49.37 | 18.36 |
| VIT_18s0001g05460.t01 | Wine grape | cytosol, mitochondrion | 14.18 | 18.06 |
| CDY61957 | Canola | plastid | 15.19 | 15.87 |
| VIT_18s0001g05430.t01 | Wine grape | cytosol | 17.22 | 14.11 |
| CDY12910 | Canola | plastid | 1.01 | 2.68 |
Protein Annotations
| Gene3D:1.10.600.10 | Gene3D:1.50.10.130 | EntrezGene:100854956 | wikigene:100854956 | MapMan:9.1.4.2 | ProteinID:CCB50224 |
| ProteinID:CCB50224.1 | UniProt:F6HDC9 | EMBL:FN595654 | GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0010333 | GO:GO:0016829 | GO:GO:0046872 |
| InterPro:IPR008949 | InterPro:IPR036965 | InterPro:Isoprenoid_synthase_dom_sf | EntrezGene:LOC100854956 | wikigene:LOC100854956 | PFAM:PF01397 |
| PFAM:PF03936 | PANTHER:PTHR31225 | PANTHER:PTHR31225:SF16 | SUPFAM:SSF48239 | SUPFAM:SSF48576 | InterPro:Terpene_cyclase_like_1_C |
| InterPro:Terpene_synth_N | InterPro:Terpene_synth_N_sf | InterPro:Terpene_synthase_metal-bd | InterPro:Terpenoid_cyclase/PrenylTrfase | UniParc:UPI0002107F17 | ArrayExpress:VIT_00s2271g00010 |
| EnsemblPlantsGene:VIT_00s2271g00010 | EnsemblPlants:VIT_00s2271g00010.t01 | RefSeq:XP_003635633 | RefSeq:XP_003635633.1 | SEG:seg | : |
Description
No Description!
Coordinates
chrUn:-:41511909..41514301
Molecular Weight (calculated)
46232.2 Da
IEP (calculated)
4.973
GRAVY (calculated)
-0.384
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: VFSRFKDETG SFKACLCEDM KGMLCLYEAS YLCVQGESTL EQARDFAHRH LGKGLEQNID QNLAIEVNHA LELPLHWRMP RLEARWFIDV YEKRQDLNPI
101: LLEFAKLDFN MVQATHQEDL RHMSSWWRST RLGEKLKFAR DRLVENFLWT VGEIFEPQYG YYRRMSTKVN TLKTIIDDVY DVYGTLDELE LFTDAVDRWD
201: INAMDPLPEY MKMCFLALYN STNEMAYDAL KEHGLHIIFY LRKVWSDLCK SFLLEAKWYY SGYKPTLQSL ERYHNIIRWS SMISRLSDDL GTSLDELKRG
301: DVPKSIQCYM YEIGASEEEA RKHISYLIGE TWKKLNEDGA VESPFPETFI GIATNLARMA QCMYQHGDGF GIEYGETKDR VLSLLVEPVP SLSSE
101: LLEFAKLDFN MVQATHQEDL RHMSSWWRST RLGEKLKFAR DRLVENFLWT VGEIFEPQYG YYRRMSTKVN TLKTIIDDVY DVYGTLDELE LFTDAVDRWD
201: INAMDPLPEY MKMCFLALYN STNEMAYDAL KEHGLHIIFY LRKVWSDLCK SFLLEAKWYY SGYKPTLQSL ERYHNIIRWS SMISRLSDDL GTSLDELKRG
301: DVPKSIQCYM YEIGASEEEA RKHISYLIGE TWKKLNEDGA VESPFPETFI GIATNLARMA QCMYQHGDGF GIEYGETKDR VLSLLVEPVP SLSSE
001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD
Arabidopsis Description
TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.