Factsheet for VIT_12s0134g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0134g00030.t01	Wine grape	mitochondrion	85.52	88.77
VIT_12s0134g00040.t01	Wine grape	mitochondrion	25.29	67.86
VIT_13s0067g00300.t01	Wine grape	cytosol	16.47	62.66
VIT_13s0067g03770.t01	Wine grape	cytosol	35.61	61.67
VIT_13s0067g00090.t01	Wine grape	cytosol	34.11	58.57
VIT_13s0067g03740.t01	Wine grape	cytosol	39.77	56.64
VIT_00s2271g00010.t01	Wine grape	cytosol	37.1	56.46
VIT_13s0067g03700.t01	Wine grape	cytosol	51.25	54.42
VIT_00s0724g00010.t01	Wine grape	cytosol	38.27	53.86
VIT_13s0084g00010.t01	Wine grape	cytosol	48.92	53.36
VIT_13s0067g00320.t01	Wine grape	cytosol	10.15	51.69
VIT_13s0067g00370.t01	Wine grape	plastid	49.42	50.34
VIT_13s0067g00130.t01	Wine grape	plastid	42.6	49.14
VIT_13s0019g00060.t01	Wine grape	plastid	46.92	47.47
VIT_13s0067g03790.t01	Wine grape	plastid	46.26	46.88
VIT_00s0392g00030.t01	Wine grape	cytosol	24.63	46.69
VIT_13s0067g03830.t01	Wine grape	plastid	32.28	44.09
VIT_00s0361g00060.t01	Wine grape	cytosol	40.6	43.11
VIT_00s0372g00060.t01	Wine grape	cytosol	12.48	40.11
VIT_00s0392g00060.t01	Wine grape	cytosol	27.95	40.1
VIT_12s0059g02710.t01	Wine grape	plastid	34.44	39.88
VIT_18s0001g04200.t01	Wine grape	cytosol	7.82	39.5
VIT_12s0059g02720.t01	Wine grape	plastid	24.63	38.14
VIT_12s0134g00140.t01	Wine grape	cytosol	18.47	38.01
VIT_00s0271g00030.t01	Wine grape	cytosol	30.45	37.97
VIT_12s0134g00090.t01	Wine grape	cytosol	18.14	37.07
VIT_00s0271g00010.t01	Wine grape	cytosol	29.78	36.38
VIT_00s0847g00020.t01	Wine grape	cytosol	24.79	36.25
VIT_00s0572g00010.t01	Wine grape	cytosol	26.96	36.0
VIT_08s0007g06860.t01	Wine grape	plastid	17.14	35.89
VIT_00s0266g00020.t01	Wine grape	cytosol	28.95	35.73
VIT_00s0372g00020.t01	Wine grape	cytosol	23.96	35.47
VIT_00s0266g00010.t01	Wine grape	cytosol	29.78	35.31
VIT_00s0572g00020.t01	Wine grape	cytosol	29.62	35.11
VIT_00s0372g00040.t01	Wine grape	cytosol	29.62	35.11
VIT_00s0266g00070.t01	Wine grape	cytosol	28.62	33.27
VIT_00s0385g00020.t01	Wine grape	cytosol	28.12	33.27
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	26.96	33.06
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	31.61	32.93
VIT_18s0001g04510.t01	Wine grape	plastid	15.64	30.72
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	14.97	29.03
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	30.12	28.06
VIT_18s0001g05430.t01	Wine grape	cytosol	17.8	22.2

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:100243167	wikigene:100243167	MapMan:9.1.4.2	ProteinID:ADR74204
ProteinID:ADR74204.1	EMBL:AM463866	ProteinID:CAN65805	ProteinID:CAN65805.1	ProteinID:CCB44722	ProteinID:CCB44722.1
ncoils:Coil	UniProt:E5GAG5	EMBL:FN594966	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872
EMBL:HM807385	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	EntrezGene:LOC100243167	wikigene:LOC100243167
RefSeq:NP_001268188.1	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF5	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI00015CA5B5	ArrayExpress:VIT_12s0134g00020	EnsemblPlantsGene:VIT_12s0134g00020	EnsemblPlants:VIT_12s0134g00020.t01	:	:

Description

(E)-beta-ocimene synthase [Source:UniProtKB/TrEMBL;Acc:E5GAG5]

Coordinates

chr12:-:7533163..7535905

Molecular Weight (calculated)

69762.8 Da

IEP (calculated)

6.137

GRAVY (calculated)

-0.397

Length

601 amino acids

Sequence
(BLAST)

001: MALHLFYFPK QCFLTHNLPG HPMKKPPRGT TAQIRCSANE QSFSLMTESR RSAHYQPAFW SYDFVESLKK REEICDGSVK ELEKMYEDRA RKLEDEVKWM
101: IHEKSAEPLT LLEFIDDIQR LGLGHRFEND IKRSLDKILL LEGSNAGKGE SLHHTALRFR ILKQHGYKVS QEVFEGFTDQ NGHFKACLCK DVKGMLSLYE
201: ASYLASEGET LLHEAMAFLK MHLKDLEGTL DKSLEELVNH AMELPLHRRM PRLEARWFIE AYKRREGADD VLLELAILDF NMVQWTLQDD LQDMSRWWKD
301: MGLASKLHFA RDRLMECFFW TVGMAFEPEF SNCRKGLTKV TSFITTIDDV YDVYGSVDEL ELFTDAVARW DINMVNNLPG YMKLCFLALY NTVNEMAYDT
401: LKEQGHNILP YLTKAWADLC KVFLVEAKWC HKEYTPTFEE YLENGWRSVS GAAILIHAYF LMSKNITKEA LECLENDHEL LRWPSTIFRL CNDLATSKAE
501: LERGESANSI SCYMHQTGVS EEDAREHMKI LIDESWKKMN KVREMDSDSP FAKPFVETAI NLARIAQCTY QYGDSHGAPD ARSKKRVLSL IVEPIPMNLK
601: K

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.