Factsheet for VIT_13s0067g03830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g00300.t01	Wine grape	cytosol	27.05	75.32
VIT_13s0067g03790.t01	Wine grape	plastid	93.18	69.14
VIT_13s0019g00060.t01	Wine grape	plastid	93.18	69.02
PGSC0003DMT400089009	Potato	cytosol	20.91	57.14
PGSC0003DMT400055897	Potato	cytosol	15.68	57.02
VIT_13s0067g00130.t01	Wine grape	plastid	62.05	52.4
VIT_00s0724g00010.t01	Wine grape	cytosol	50.0	51.52
VIT_13s0067g03740.t01	Wine grape	cytosol	49.32	51.42
VIT_13s0084g00010.t01	Wine grape	cytosol	60.68	48.46
Solyc01g105960.2.1	Tomato	cytosol	38.64	48.02
VIT_13s0067g03700.t01	Wine grape	cytosol	61.59	47.88
VIT_13s0067g00370.t01	Wine grape	plastid	62.5	46.61
VIT_00s2271g00010.t01	Wine grape	cytosol	40.0	44.56
CDY68676	Canola	cytosol	37.05	43.35
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	23.18	40.64
VIT_12s0059g02720.t01	Wine grape	plastid	35.68	40.46
VIT_08s0007g06860.t01	Wine grape	plastid	26.36	40.42
VIT_13s0067g03770.t01	Wine grape	cytosol	31.82	40.35
VIT_13s0067g00090.t01	Wine grape	cytosol	30.23	38.0
VIT_18s0001g04200.t01	Wine grape	cytosol	10.23	37.82
VIT_12s0134g00040.t01	Wine grape	mitochondrion	18.18	35.71
VIT_12s0059g02710.t01	Wine grape	plastid	41.82	35.45
Bra000727.1-P	Field mustard	plastid	38.86	33.6
AT4G16740.1	Thale cress	mitochondrion	41.59	32.39
VIT_12s0134g00020.t01	Wine grape	plastid	44.09	32.28
VIT_18s0001g04510.t01	Wine grape	plastid	22.27	32.03
VIT_12s0134g00030.t01	Wine grape	mitochondrion	42.05	31.95
CDY68788	Canola	endoplasmic reticulum, golgi	30.45	31.9
Bra038504.1-P	Field mustard	plastid	38.86	31.84
VIT_00s0361g00060.t01	Wine grape	cytosol	40.45	31.45
VIT_00s0847g00020.t01	Wine grape	cytosol	29.09	31.14
Bra021082.1-P	Field mustard	cytosol	38.18	30.77
Bra025163.1-P	Field mustard	cytosol	38.86	30.54
AT4G16730.1	Thale cress	cytosol	36.36	29.68
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	32.95	29.59
CDX83558	Canola	plastid	39.55	29.54
CDY13587	Canola	plastid	39.32	29.37
CDX76827	Canola	plastid	37.27	29.34
CDX90785	Canola	plastid	39.32	29.17
VIT_00s0271g00030.t01	Wine grape	cytosol	31.59	28.84
AT3G25830.1	Thale cress	plastid	39.32	28.83
AT3G25820.1	Thale cress	plastid	39.32	28.83
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	20.23	28.71
AT3G25810.1	Thale cress	plastid	38.86	28.6
VIT_00s0385g00020.t01	Wine grape	cytosol	32.5	28.15
Bra000568.1-P	Field mustard	plastid	37.27	27.56
CDX83208	Canola	plastid	37.27	27.56
CDX83560	Canola	plastid	35.23	27.43
AT2G24210.1	Thale cress	plastid	36.82	27.41
CDY21487	Canola	plastid	37.05	27.39
VIT_00s0372g00060.t01	Wine grape	cytosol	11.59	27.27
VIT_00s0392g00060.t01	Wine grape	cytosol	25.91	27.21
VIT_00s0271g00010.t01	Wine grape	cytosol	29.77	26.63
VIT_00s0266g00020.t01	Wine grape	cytosol	29.09	26.28
CDY13589	Canola	plastid	33.18	26.21
VIT_00s0266g00070.t01	Wine grape	cytosol	30.45	25.92
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	33.86	25.82
CDY61957	Canola	plastid	22.05	25.66
VIT_00s0266g00010.t01	Wine grape	cytosol	29.32	25.44
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	39.32	25.33
VIT_00s0372g00040.t01	Wine grape	cytosol	29.09	25.25
CDY54750	Canola	cytosol	22.95	25.19
CDY62515	Canola	cytosol	22.73	24.94
VIT_00s0572g00020.t01	Wine grape	cytosol	28.64	24.85
CDY12910	Canola	plastid	8.41	24.83
CDY66920	Canola	cytosol	18.41	24.47
VIT_00s0572g00010.t01	Wine grape	cytosol	24.55	24.0
VIT_00s0392g00030.t01	Wine grape	cytosol	16.82	23.34
VIT_00s0372g00020.t01	Wine grape	cytosol	20.91	22.66
Bra027079.1-P	Field mustard	plastid	16.14	21.32
VIT_18s0001g05430.t01	Wine grape	cytosol	22.95	20.95
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	30.0	20.47
VIT_12s0134g00140.t01	Wine grape	cytosol	13.41	20.21
VIT_12s0134g00090.t01	Wine grape	cytosol	13.41	20.07
CDY53129	Canola	cytosol	11.14	19.14
CDY53648	Canola	cytosol	11.14	19.14
CDY12909	Canola	cytosol	9.55	18.1
Bra025164.1-P	Field mustard	cytosol	39.32	16.29
KRH22502	Soybean	cytosol	4.32	10.86
GSMUA_Achr4P07690_001	Banana	cytosol	0.68	1.75
VIT_13s0067g00320.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	ProteinID:CCB62297	ProteinID:CCB62297.1	UniProt:F6I5S9
EMBL:FN596752	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	GO:GO:0046872	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0002109BE8	ArrayExpress:VIT_13s0067g03830	EnsemblPlantsGene:VIT_13s0067g03830	EnsemblPlants:VIT_13s0067g03830.t01	:	:

Description

No Description!

Coordinates

chr13_random:+:2163075..2165321

Molecular Weight (calculated)

51567.7 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.322

Length

440 amino acids

Sequence
(BLAST)

001: MALLTLSSNP FFTFTRLQPA SRFCRGKSQG VCISGPVQCT GGAKTSSQTA VIVRRTASYQ PSIWDHDYIQ SLTSDYVGET YTRQLEKLKG DVKIMLGQVG
101: EPLHQLELID TLQRLGIHYH FGEEIKRILH GIYNNYNRND TWKNGDLYAT ALEFRLLRQH GYHVPQDVFH IFINKMGTVK PWLNEDIKGI LCLYEASYLS
201: VEGENILEEA RDFTRNFLEE YLERTVDQND LTAIINHAME LPLHWRMLRL EARWFIDVYE RSQGMNPILL ELAKLDYNMV QATYQEDLKH ASMWWRSTRL
301: PEKSSFARDR LVENFLWAVG FIFEPQFGYC RRMLTKLISL ITTIDDVYDV YGTLDELELF TDAVDRWDTN AMEQLPQYMK ICFLALYNFT NETAYDVLKE
401: HDLNIISYLR NAWRRNGTTK VISHLYRSIS TMPGFQYQVH

Best Arabidopsis Sequence Match ( AT4G16740.2 )
(BLAST)

001: MPKRQAQRRF TRKTDSKTPS QPLVSRRSAN YQPSLWQHEY LLSLGNTYVK EDNVERVTLL KQEVSKMLNE TEGLLEQLEL IDTLQRLGVS YHFEQEIKKT
101: LTNVHVKNVR AHKNRIDRNR WGDLYATALE FRLLRQHGFS IAQDVFDGNI GVDLDDKDIK GILSLYEASY LSTRIDTKLK ESIYYTTKRL RKFVEVNKNE
201: TKSYTLRRMV IHALEMPYHR RVGRLEARWY IEVYGERHDM NPILLELAKL DFNFVQAIHQ DELKSLSSWW SKTGLTKHLD FVRDRITEGY FSSVGVMYEP
301: EFAYHRQMLT KVFMLITTID DIYDIYGTLE ELQLFTTIVE KWDVNRLEEL PNYMKLCFLC LVNEINQIGY FVLRDKGFNV IPYLKESVRI LIILSM

Arabidopsis Description

TPS03Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A4FVP2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.