Factsheet for VIT_12s0134g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0134g00020.t01	Wine grape	plastid	88.77	85.52
VIT_12s0134g00040.t01	Wine grape	mitochondrion	25.73	66.52
VIT_13s0067g03770.t01	Wine grape	cytosol	35.58	59.37
VIT_13s0067g00300.t01	Wine grape	cytosol	15.89	58.23
VIT_13s0067g00090.t01	Wine grape	cytosol	33.51	55.43
VIT_13s0067g03740.t01	Wine grape	cytosol	39.21	53.79
VIT_00s2271g00010.t01	Wine grape	cytosol	36.27	53.16
VIT_13s0067g03700.t01	Wine grape	cytosol	51.47	52.65
VIT_00s0724g00010.t01	Wine grape	cytosol	38.69	52.46
VIT_13s0084g00010.t01	Wine grape	cytosol	48.53	51.0
VIT_13s0067g00320.t01	Wine grape	cytosol	10.19	50.0
VIT_13s0067g00370.t01	Wine grape	plastid	48.01	47.12
VIT_13s0067g00130.t01	Wine grape	plastid	42.14	46.83
VIT_00s0392g00030.t01	Wine grape	cytosol	24.87	45.43
VIT_13s0019g00060.t01	Wine grape	plastid	46.11	44.95
VIT_13s0067g03790.t01	Wine grape	plastid	45.77	44.69
VIT_13s0067g03830.t01	Wine grape	plastid	31.95	42.05
VIT_00s0361g00060.t01	Wine grape	cytosol	40.76	41.7
VIT_00s0372g00060.t01	Wine grape	cytosol	13.13	40.64
VIT_18s0001g04200.t01	Wine grape	cytosol	8.12	39.5
VIT_00s0271g00030.t01	Wine grape	cytosol	32.12	38.59
VIT_12s0059g02710.t01	Wine grape	plastid	34.54	38.54
VIT_00s0392g00060.t01	Wine grape	cytosol	27.81	38.42
VIT_12s0134g00140.t01	Wine grape	cytosol	19.0	37.67
VIT_12s0059g02720.t01	Wine grape	plastid	25.22	37.63
VIT_00s0847g00020.t01	Wine grape	cytosol	26.08	36.74
VIT_12s0134g00090.t01	Wine grape	cytosol	18.65	36.73
VIT_00s0271g00010.t01	Wine grape	cytosol	31.09	36.59
VIT_00s0572g00010.t01	Wine grape	cytosol	28.15	36.22
VIT_00s0266g00020.t01	Wine grape	cytosol	30.22	35.93
VIT_00s0372g00020.t01	Wine grape	cytosol	25.04	35.71
VIT_00s0266g00010.t01	Wine grape	cytosol	31.26	35.7
VIT_00s0572g00020.t01	Wine grape	cytosol	31.09	35.5
VIT_00s0372g00040.t01	Wine grape	cytosol	31.09	35.5
VIT_08s0007g06860.t01	Wine grape	plastid	17.27	34.84
VIT_00s0266g00070.t01	Wine grape	cytosol	30.05	33.66
VIT_00s0271g00060.t01	Wine grape	cytosol, plastid	33.16	33.28
VIT_00s0385g00020.t01	Wine grape	cytosol	29.02	33.07
VIT_00s0385g00010.t01	Wine grape	cytosol, plastid	27.81	32.86
VIT_18s0001g04510.t01	Wine grape	plastid	16.23	30.72
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	15.89	29.68
VIT_00s0372g00070.t01	Wine grape	cytosol, plasma membrane, plastid	31.43	28.22
VIT_18s0001g05430.t01	Wine grape	cytosol	18.83	22.61

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	EntrezGene:100263737	wikigene:100263737	MapMan:9.1.4.2	ProteinID:ADR74205
ProteinID:ADR74205.1	ProteinID:CCB44723	ProteinID:CCB44723.1	UniProt:F6GXN7	EMBL:FN594966	GO:GO:0000287
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333
GO:GO:0016829	GO:GO:0046872	EMBL:HM807386	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf
EntrezGene:LOC100263737	wikigene:LOC100263737	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31225	PANTHER:PTHR31225:SF5
SUPFAM:SSF48239	SUPFAM:SSF48576	TIGR:TC56408	TIGR:TC69269	InterPro:Terpene_cyclase_like_1_C	InterPro:Terpene_synth_N
InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI000198463D	ArrayExpress:VIT_12s0134g00030	EnsemblPlantsGene:VIT_12s0134g00030
EnsemblPlants:VIT_12s0134g00030.t01	unigene:Vvi.5184	:	:	:	:

Description

No Description!

Coordinates

chr12:-:7549484..7552781

Molecular Weight (calculated)

67092.8 Da

IEP (calculated)

6.425

GRAVY (calculated)

-0.395

Length

579 amino acids

Sequence
(BLAST)

001: MKKLPRGTTP QIRCSATEQS FSLMTKSRRS AHYQPAFWSY NFVESLKKRE EICDGSVKEL EKMYEDRARK LEDEVKWMIH EKSAEPLTLL EFIDDIQRLG
101: LGYRFENDIK RSLDKILLLE GSNAGKGESL HHTALRFRIL KQHGYKVTQD VFEAFTDCNG DFKPCLCKDV KGMLSLYEAS YLALEGETLL HEAMVFTKMH
201: LKALGGNMDK SLEELVNHAM ELPLHHRMPR LEDRWCIEAY KRREGRDDVL LELAMLGFNM VQSTLQDELK DMFKWWKDMG LANKLDFARD RLMECFFSAV
301: GMAFKPEFSK CRKGLTKVAA FISSIDDVYD VYGSLDELEL FTDAVTRWDI NMVNNLPDYM KLCFLALYNT VNEMAYHTLK EQGHNILPYL TKAWADLCKV
401: FLVEAKWAHK EYIPTFEEYL ENGWRSASGV AILIHAYFLM SKNITKEALE CLENDHELLR WPSTILRLCN DLATSKAELE RGESANSISC YMHQTGVSEE
501: SAREHMKILT GESWKKMNKV REPDYDSPFS KPFMEIAFNL ARISECTYQY GDAHGAPDAR SRQRVLSLII EPIPLNLKK

Best Arabidopsis Sequence Match ( AT3G25810.1 )
(BLAST)

001: MATLCIGSAP IYQNACIHNF RLQRPRRFIS KSMTKTMPDA NPLDLRRRSG NYQPSSWDHS YLLSIENKYV NEKEVITRHV LKKKVKKMLE EVETKSRLEK
101: LELIDDLQKL GVSYHFEQEI NNILTNFHLE NGKNIWKCDK EEDLHATALE FRLLRQHGFG VSEDIFDVII DKIESNTFKS DNITSIITLY EASYLSTKSD
201: TKLHKVIRPF ATEQIRNFVD DESETYNIML REMAIHALEI PYHWRMRRLE TRWYIDAYEK KHDMNLFLAE FAKIDFNIVQ TAHQEDVKYV SCWWKETGLG
301: SQLHFVRDRI VENYFWTVGM IYEPQFGYIR RIVAIVAALI TVIDDIYDIY GTPEELELFT AMVQNWDINR LDELPEYMKL CFLTLFNEIN AMGCDVLKCK
401: NIDVIPYFKK SWADLCKAYL VEAKWYKGGY KPSVEEYMQN AWISISAPTM LIHFYCAFSG QISVQILESL VQQQQDVVRC SATVLRLAND LATSPDELAR
501: GDVLKSVQCY MHETGVSEEE ARTHVQQMIS HTWDEMNYEA RTAARSSSLL SRRFVETAMN LARMSQCMYQ HGDGHGCPDK AKIVDRVQTL LVDPIPLD

Arabidopsis Description

TPS24Beta-myrcene/(E)-beta-ocimene synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.