Factsheet for PGSC0003DMT400089009

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g00300.t01	Wine grape	cytosol	45.34	46.2
PGSC0003DMT400055897	Potato	cytosol	26.71	35.54
PGSC0003DMT400062798	Potato	cytosol, mitochondrion	29.19	35.07
PGSC0003DMT400075074	Potato	cytosol	34.78	26.92
VIT_13s0067g03770.t01	Wine grape	cytosol	48.45	22.48
VIT_00s2271g00010.t01	Wine grape	cytosol	53.42	21.77
CDY68676	Canola	cytosol	50.31	21.54
VIT_13s0067g03830.t01	Wine grape	plastid	57.14	20.91
VIT_13s0067g00090.t01	Wine grape	cytosol	45.34	20.86
VIT_13s0067g03740.t01	Wine grape	cytosol	54.66	20.85
PGSC0003DMT400050941	Potato	cytosol	32.3	20.8
PGSC0003DMT400047124	Potato	cytosol	39.13	20.26
VIT_00s0724g00010.t01	Wine grape	cytosol	53.42	20.14
CDY54750	Canola	cytosol	44.72	17.96
CDY62515	Canola	cytosol	44.1	17.71
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	26.71	17.13
CDY66920	Canola	cytosol	33.54	16.31
VIT_13s0067g03700.t01	Wine grape	cytosol	57.14	16.25
VIT_13s0084g00010.t01	Wine grape	cytosol	55.28	16.15
VIT_13s0067g00130.t01	Wine grape	plastid	52.17	16.12
VIT_13s0019g00060.t01	Wine grape	plastid	57.76	15.66
VIT_13s0067g03790.t01	Wine grape	plastid	57.14	15.51
VIT_13s0067g00370.t01	Wine grape	plastid	55.28	15.08
Bra021082.1-P	Field mustard	cytosol	50.93	15.02
AT4G16740.1	Thale cress	mitochondrion	52.17	14.87
CDY12909	Canola	cytosol	21.12	14.66
Bra000727.1-P	Field mustard	plastid	45.34	14.34
AT4G16730.1	Thale cress	cytosol	46.58	13.91
Bra038504.1-P	Field mustard	plastid	45.34	13.59
Bra025163.1-P	Field mustard	cytosol	46.58	13.39
CDX83560	Canola	plastid	44.72	12.74
CDY13587	Canola	plastid	46.58	12.73
PGSC0003DMT400015998	Potato	plastid	45.34	12.56
CDX83558	Canola	plastid	45.96	12.56
CDX83208	Canola	plastid	45.96	12.44
Bra000568.1-P	Field mustard	plastid	45.96	12.44
PGSC0003DMT400067594	Potato	cytosol	18.63	12.35
CDX76827	Canola	plastid	42.86	12.34
AT3G25830.1	Thale cress	plastid	45.96	12.33
AT3G25820.1	Thale cress	plastid	45.96	12.33
CDX90785	Canola	plastid	45.34	12.31
CDY21487	Canola	plastid	45.34	12.27
PGSC0003DMT400029354	Potato	cytosol	21.12	11.89
AT3G25810.1	Thale cress	plastid	44.1	11.87
AT2G24210.1	Thale cress	plastid	42.86	11.68
CDY68788	Canola	endoplasmic reticulum, golgi	29.19	11.19
PGSC0003DMT400070310	Potato	cytosol	21.12	10.93
PGSC0003DMT400079785	Potato	cytosol	20.5	10.61
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	44.72	10.54
Bra027079.1-P	Field mustard	plastid	21.12	10.21
CDY53648	Canola	cytosol	16.15	10.16
CDY53129	Canola	cytosol	16.15	10.16
CDY13589	Canola	plastid	32.92	9.52
CDY61957	Canola	plastid	21.74	9.26
PGSC0003DMT400029265	Potato	cytosol	27.33	8.58
PGSC0003DMT400029275	Potato	cytosol	13.66	8.12
KRH22502	Soybean	cytosol	8.7	8.0
PGSC0003DMT400095524	Potato	cytosol	18.63	6.82
Bra025164.1-P	Field mustard	cytosol	44.72	6.78
PGSC0003DMT400029266	Potato	cytosol	16.77	6.47
GSMUA_Achr4P07690_001	Banana	cytosol	1.86	1.75
CDY12910	Canola	plastid	1.24	1.34
VIT_13s0067g00320.t01	Wine grape	cytosol	0.62	0.85

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949
InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1DH87	PFAM:PF03936	EnsemblPlantsGene:PGSC0003DMG400038580	PGSC:PGSC0003DMG400038580
EnsemblPlants:PGSC0003DMT400089009	PANTHER:PTHR31225	PANTHER:PTHR31225:SF16	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_synth_N_sf
InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0002950133	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400038580]

Coordinates

chr3:+:31948634..31950058

Molecular Weight (calculated)

19555.8 Da

IEP (calculated)

4.640

GRAVY (calculated)

-0.102

Length

161 amino acids

Sequence
(BLAST)

001: MDDHDKNNIL VKQVSHALEM PLHWKVQRLE ARWFIDNVYE QSECFNPILL QLAKLDFNML QAIYLDELKQ LSRWHENMNL VEMMGFTRDR LVEFFFWNVG
101: FAFEPKFWFC RKWIVKLGEL ITIIDDMYEL HGTLEELVLF TDMVDRWDVN AMEQLPSRCV F

Best Arabidopsis Sequence Match ( AT3G25820.2 )
(BLAST)

001: MATLRISSAL IYQNTLTHHF RLRRPHRFVC KSMTKTTPDT TLVELSRRSG NYQPSPWNHC YLLSIENKYA SETEVITRDV LKKKVKSMLD DEKKSRLEQL
101: ELIDDLQKLG VSYHFEIEIN DTLTDLHLKM GRNCWKCDKE EDLHATSLEF RLLRQHGFDV SENIFDVIID QIESNTFKTN NINGIISLYE ASYLSTKSDT
201: KLHKVIRPFA TEQIRKFVDD EDTKNIEVRE KAYHALEMPY HWRMRRLDTR WYIDAYEKKH DMNLVLIEFA KIDFNIVQAA HQEDLKYVSR WWKDTCLTNQ
301: LPFVRDRIVE NYFWTVGLIY EPQFGYIRRI MTIVNALVTT IDDIYDIYGT LEELELFTSM VENWDVNRLG ELPEYMRLCF LILYNEINGI GCDILKYKKI
401: DVIPYLKKSW AELCRTYLVE ERGYKRGMQT KLGRIHAKCL DFNC

Arabidopsis Description

TPS271,8-cineole synthase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P0DI77]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.