Skip to main content
crop-pal logo
Potato
Search for another protein from :
Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400075074 Potato cytosol 44.05 65.87
PGSC0003DMT400062798 Potato cytosol, mitochondrion 20.9 48.51
PGSC0003DMT400089009 Potato cytosol 20.26 39.13
PGSC0003DMT400050941 Potato cytosol 30.55 38.0
PGSC0003DMT400079785 Potato cytosol 34.73 34.73
PGSC0003DMT400070310 Potato cytosol 34.08 34.08
CDY27296 Canola cytosol 20.26 32.31
VIT_18s0001g04200.t01 Wine grape cytosol 11.25 29.41
VIT_18s0001g05460.t01 Wine grape cytosol, mitochondrion 27.01 27.1
Bra027609.1-P Field mustard cytosol 25.08 27.08
CDY70719 Canola cytosol 29.26 26.15
VIT_18s0001g04510.t01 Wine grape plastid 24.44 24.84
PGSC0003DMT400055897 Potato cytosol 9.32 23.97
CDY18347 Canola cytosol 12.54 23.49
CDX95273 Canola plastid 31.19 23.15
Bra012515.1-P Field mustard extracellular 17.04 21.46
CDX75775 Canola plastid 33.12 21.28
CDX82477 Canola plastid 19.94 20.67
CDY09325 Canola plastid 17.68 20.37
VIT_18s0001g05430.t01 Wine grape cytosol 30.55 19.71
CDX82475 Canola plastid 36.66 19.62
CDY67821 Canola cytosol 12.22 19.59
Bra012513.1-P Field mustard cytosol 29.58 19.37
KRG93110 Soybean mitochondrion 18.33 19.26
CDX75776 Canola plastid 36.33 19.25
Bra035927.1-P Field mustard mitochondrion, plastid 35.05 19.19
AT3G14490.1 Thale cress plastid 36.98 19.13
Bra002968.1-P Field mustard plastid 23.47 18.91
CDY14933 Canola cytosol 29.58 18.85
CDX98470 Canola plastid 35.37 18.84
AT3G14540.1 Thale cress plastid 36.33 18.77
Bra001557.1-P Field mustard plastid 36.33 18.71
CDX82478 Canola cytosol 32.15 18.62
AT3G14520.1 Thale cress plastid 35.69 18.35
AT5G44630.1 Thale cress cytosol 32.8 18.31
CDY69236 Canola cytosol 28.3 18.18
CDX87217 Canola plastid 35.05 18.14
CDX98661 Canola cytosol 32.48 18.13
Bra001555.1-P Field mustard plastid 35.37 18.09
CDY02143 Canola plastid 32.15 18.08
PGSC0003DMT400015998 Potato plastid 33.76 18.07
AT1G31950.3 Thale cress cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole 35.05 17.93
CDY39124 Canola cytoskeleton, cytosol, plastid 32.15 17.89
Bra012955.1-P Field mustard plastid 34.41 17.86
CDY68962 Canola cytosol 28.94 17.86
Bra021563.1-P Field mustard cytoskeleton, cytosol, plastid 31.83 17.71
CDX74453 Canola cytosol 30.23 17.7
AT5G48110.1 Thale cress plastid 19.29 17.7
AT3G32030.1 Thale cress plastid 34.08 17.55
CDY39119 Canola plastid 33.76 17.44
Bra021560.1-P Field mustard plastid 33.76 17.44
AT3G29410.1 Thale cress plastid 33.44 17.25
CDY06577 Canola cytosol 18.01 17.07
AT1G48820.1 Thale cress mitochondrion, plastid 30.55 16.93
Bra021566.1-P Field mustard plastid 27.65 16.93
Bra028251.1-P Field mustard cytosol 30.23 16.88
Bra021564.1-P Field mustard plastid 32.48 16.75
AT1G33750.1 Thale cress mitochondrion, plastid 32.48 16.75
AT4G15870.1 Thale cress plastid 32.15 16.72
Bra039519.1-P Field mustard cytosol 29.9 16.7
CDY41707 Canola plastid 31.19 16.67
Bra002165.1-P Field mustard cytosol 29.58 16.55
CDY63249 Canola cytosol 29.58 16.55
CDY42473 Canola cytosol 29.58 16.37
Bra027931.1-P Field mustard plastid 31.51 16.31
AT1G70080.1 Thale cress mitochondrion 31.83 16.2
AT2G23230.2 Thale cress plastid 31.83 16.2
AT4G20210.1 Thale cress plastid 31.19 16.17
AT3G29110.1 Thale cress plastid 30.87 16.13
CDY32356 Canola plastid 32.15 16.13
CDX76471 Canola plastid 31.19 16.09
AT4G20200.1 Thale cress plastid 30.87 15.89
AT3G29190.1 Thale cress plastid 30.55 15.81
AT4G13300.1 Thale cress cytosol 27.97 15.7
CDY09324 Canola plastid 30.23 15.69
Bra020921.1-P Field mustard cytosol 20.26 15.56
PGSC0003DMT400029265 Potato cytosol 25.4 15.4
CDX98659 Canola plastid 30.55 15.37
AT4G20230.2 Thale cress plastid 30.55 15.35
Bra020953.1-P Field mustard plastid 29.9 15.25
AT4G13280.2 Thale cress cytosol 27.01 15.16
CDY54565 Canola plastid 27.97 15.13
Bra002714.1-P Field mustard plastid 28.62 15.11
CDY49723 Canola plastid 28.94 15.1
AT1G66020.1 Thale cress plastid 28.94 15.05
PGSC0003DMT400029354 Potato cytosol 13.83 15.04
CDY13053 Canola extracellular 26.69 15.01
CDX76457 Canola plastid 28.94 14.97
CDX75774 Canola cytosol, golgi, mitochondrion, plasma membrane 18.01 14.7
CDY71184 Canola cytosol 15.76 14.67
PGSC0003DMT400029266 Potato cytosol 19.61 14.63
AT1G48800.1 Thale cress mitochondrion, plastid 28.3 14.59
CDY01639 Canola cytosol 9.0 14.51
PGSC0003DMT400029275 Potato cytosol 11.58 13.28
PGSC0003DMT400067594 Potato cytosol 9.65 12.35
PGSC0003DMT400095524 Potato cytosol 17.04 12.05
CDY23121 Canola cytosol 13.5 11.05
CDY14934 Canola cytosol 0.32 6.25
CDX95274 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.10.600.10Gene3D:1.50.10.130MapMan:9.1.4.2GO:GO:0000287GO:GO:0003674GO:GO:0003824
GO:GO:0005488GO:GO:0008150GO:GO:0008152GO:GO:0010333GO:GO:0016829GO:GO:0046872
InterPro:IPR008949InterPro:IPR036965InterPro:Isoprenoid_synthase_dom_sfUniProt:M1BK50PFAM:PF01397PFAM:PF03936
EnsemblPlantsGene:PGSC0003DMG400018286PGSC:PGSC0003DMG400018286EnsemblPlants:PGSC0003DMT400047124PANTHER:PTHR31225PANTHER:PTHR31225:SF25SUPFAM:SSF48239
SUPFAM:SSF48576InterPro:Terpene_cyclase_like_1_CInterPro:Terpene_synth_NInterPro:Terpene_synth_N_sfInterPro:Terpene_synthase_metal-bdInterPro:Terpenoid_cyclase/PrenylTrfase
UniParc:UPI0002969271:::::
Description
Vetispiradiene synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400018286]
Coordinates
chr1:+:78855748..78857423
Molecular Weight (calculated)
36342.4 Da
IEP (calculated)
5.304
GRAVY (calculated)
-0.361
Length
311 amino acids
Sequence
(BLAST)
001: MKGKEIFSVL RKLRVVEKSP AADFSPSLWG DRFHLFSLDN KVAEKYVEEI ETLKEQTRSI LMSGKTLAEK LNLFDIVERL GIACHFEKQI DDNIDPNFEA
101: HEYNDLCISS LQFRLLRQHG YNISPKSAAP HLKSPLSKQV THALEQSLHK GIPRVETRYF ISIYEEEEFK NDVLLRFAKL DFNLLQMLHK QELSEVSRWW
201: KDLDFVTTLP YARDRAVECY FWTVGVYAEP QYSQARVMLA KTIAIISLLD DTFDAYGTVK ELEVYTDAIQ RWDISQIDRL PEYMKISYKA LLDLYNDYET
301: ELSKDGRSDV V
Best Arabidopsis Sequence Match ( AT2G24210.1 )
(BLAST)
001: MATLLQIGSG VIYSNALRKT LRRPQSSTCI IVTETTPCNK SPTVQRRSAN YQPSRWDHHH LLSVENKFAK DKRVRERDLL KEKVRKMLND EQKTYLDQLE
101: FIDDLQKLGV SYHFEAEIDN ILTSSYKKDR TNIQESDLHA TALEFRLFRQ HGFNVSEDVF DVFMENCGKF DRDDIYGLIS LYEASYLSTK LDKNLQIFIR
201: PFATQQLRDF VDTHSNEDFG SCDMVEIVVQ ALDMPYYWQM RRLSTRWYID VYGKRQNYKN LVVVEFAKID FNIVQAIHQE ELKNVSSWWM ETGLGKQLYF
301: ARDRIVENYF WTIGQIQEPQ YGYVRQTMTK INALLTTIDD IYDIYGTLEE LQLFTVAFEN WDINRLDELP EYMRLCFLVI YNEVNSIACE ILRTKNINVI
401: PFLKKSWTDV SKAYLVEAKW YKSGHKPNLE EYMQNARISI SSPTIFVHFY CVFSDQLSIQ VLETLSQHQQ NVVRCSSSVF RLANDLVTSP DELARGDVCK
501: SIQCYMSETG ASEDKARSHV RQMINDLWDE MNYEKMAHSS SILHHDFMET VINLARMSQC MYQYGDGHGS PEKAKIVDRV MSLLFNPIPL D
Arabidopsis Description
TPS10Tricyclene synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUH4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.