CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41707	Canola	plastid	94.03	67.7
Bra027931.1-P	Field mustard	plastid	93.32	65.06
CDY09325	Canola	plastid	36.52	56.67
CDY18347	Canola	cytosol	21.96	55.42
CDY01639	Canola	cytosol	23.63	51.3
CDY70719	Canola	cytosol	42.0	50.57
CDY13053	Canola	extracellular	59.19	44.85
CDY54565	Canola	plastid	56.32	41.04
CDY42473	Canola	cytosol	51.31	38.26
CDX98659	Canola	plastid	56.32	38.19
CDX76457	Canola	plastid	54.65	38.1
CDY69236	Canola	cytosol	43.91	38.02
CDX76471	Canola	plastid	54.65	37.98
CDY09324	Canola	plastid	53.46	37.4
CDX98661	Canola	cytosol	49.64	37.34
CDY68962	Canola	cytosol	44.39	36.9
CDY49723	Canola	plastid	51.79	36.41
PGSC0003DMT400050941	Potato	cytosol	21.72	36.4
CDY67821	Canola	cytosol	16.71	36.08
CDY27296	Canola	cytosol	16.71	35.9
CDY14933	Canola	cytosol	41.53	35.66
CDY23121	Canola	cytosol	31.26	34.47
CDX74453	Canola	cytosol	42.96	33.9
CDX82477	Canola	plastid	23.15	32.33
VIT_18s0001g04200.t01	Wine grape	cytosol	9.07	31.93
CDY15827	Canola	cytosol	11.69	31.61
PGSC0003DMT400047124	Potato	cytosol	23.15	31.19
CDY63249	Canola	cytosol	40.33	30.4
Solyc01g101220.1.1	Tomato	cytosol	11.93	29.76
PGSC0003DMT400075074	Potato	cytosol	14.56	29.33
CDX75775	Canola	plastid	31.74	27.48
Os02t0458100-01	Rice	plastid	24.58	26.34
CDX75776	Canola	plastid	36.75	26.24
CDX82475	Canola	plastid	35.8	25.82
VIT_18s0001g04510.t01	Wine grape	plastid	18.85	25.82
CDX98470	Canola	plastid	35.32	25.34
CDX82478	Canola	cytosol	32.46	25.33
CDY39119	Canola	plastid	35.8	24.92
CDY39124	Canola	cytoskeleton, cytosol, plastid	33.17	24.87
CDX87217	Canola	plastid	34.61	24.13
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	17.66	23.87
CDY02143	Canola	plastid	31.5	23.87
CDY72187	Canola	cytosol, mitochondrion, nucleus, plastid	14.08	23.51
CDY06577	Canola	cytosol	18.38	23.48
CDY32356	Canola	plastid	34.61	23.39
CDY68676	Canola	cytosol	20.53	22.87
CDY71184	Canola	cytosol	17.18	21.56
Solyc01g101190.2.1	Tomato	cytosol	27.92	21.2
CDY12910	Canola	plastid	7.4	20.81
CDY68788	Canola	endoplasmic reticulum, golgi	20.76	20.71
KRG93110	Soybean	mitochondrion	14.56	20.61
CDY61957	Canola	plastid	16.95	18.78
CDX90785	Canola	plastid	25.06	17.71
VIT_18s0001g05430.t01	Wine grape	cytosol	20.29	17.63
CDY21487	Canola	plastid	24.58	17.31
CDX83208	Canola	plastid	24.34	17.14
CDX76827	Canola	plastid	22.43	16.82
PGSC0003DMT400070310	Potato	cytosol	12.41	16.72
PGSC0003DMT400079785	Potato	cytosol	11.93	16.08
CDY62515	Canola	cytosol	15.04	15.71
CDY13587	Canola	plastid	21.96	15.62
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	14.08	15.49
CDY54750	Canola	cytosol	14.8	15.46
CDX83558	Canola	plastid	21.72	15.45
CDX83560	Canola	plastid	20.53	15.22
CDY13589	Canola	plastid	19.57	14.72
CDY13590	Canola	endoplasmic reticulum, extracellular, plastid	22.91	14.06
CDY12909	Canola	cytosol	7.4	13.36
CDY66920	Canola	cytosol	8.83	11.18
CDY53129	Canola	cytosol	4.77	7.81
CDY53648	Canola	cytosol	4.77	7.81
CDY14934	Canola	cytosol	0.24	6.25
CDX95274	Canola	cytosol	0.0	0.0
GSMUA_Achr6P24340_001	Banana	cytosol	0.0	0.0
GSMUA_Achr6P24330_001	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:A0A078E7C4	EnsemblPlants:CDX95273	ProteinID:CDX95273
ProteinID:CDX95273.1	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00100908001	InterPro:IPR008949	InterPro:IPR036965
InterPro:Isoprenoid_synthase_dom_sf	PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31045	PANTHER:PTHR31045:SF4	SUPFAM:SSF48239
SUPFAM:SSF48576	InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI0004EE16D4
SEG:seg	:	:	:	:	:

Description

BnaC09g15970D

Coordinates

chrLK031887:+:1066073..1072911

Molecular Weight (calculated)

48369.1 Da

IEP (calculated)

7.324

GRAVY (calculated)

-0.330

Length

419 amino acids

Sequence
(BLAST)

001: MGAITVFGPK LGSKLSIHCH TNTFPSCRLS SFPPMSFPGK PPKLVPLKAT TNTLASKDKE KNRKFKKLAP SEWGHQFIDA HVDVSEIDSL GREIKALKPK
101: VEDLFLSSSG VNSTKKNIFF IYLLVSLGLA YHFEAEIEEN LKEGFQMIEE MLSGEDDLHT VSIIFWVFRT YGHNVSSDVF RRFKGDNGKF KEYLTEDAKG
201: ILSFFAMSCL ETLVATGTCQ PHLSRRIQNA LGQPQHKNAE ILVAREYIRF YEQEEDSDKT LLKFSKLNFK FLQLQYLQEL KDLSKWYKEK EFEYKLPPYY
301: RDRLVELHLV TLPFFEPKYS RVRIMVTKLF VVQIILDDTC DRYASLREVE SLGNAIERWD LDDAMDGQPD YLKFVVKHIF DTFQEFEREV ASELGGSYSL
401: KATIDACKRY ARANLQLAT

Best Arabidopsis Sequence Match ( AT1G48800.1 )
(BLAST)

001: MEAIRVFGPK LGSRLSIRSH TTAFPACKLS RFPLTSFPGK HAHLVLLKAT TIPLASGDKE NNRKFEKLGP SEWGNQFLFA HVDLSEMDAL EREIEALKPK
101: VRDMFMSFKG MKSNKKNLFL IYLLVSLGLA HHFEDEIEES VKGCSQEMVE MMDGENDLYT VSIIFWVFRT YGHNISSDIF NRFKGHNGKF KECLATDAKG
201: ILSLYEAAHM GTTTDYILDE ALSFTLSYLE SLAANGTCKP NLVRRIRNAL GLLQNKNVEI LVAKEYIRFY EQEEDCDKTI LEFSMLNLKF LQLHYLQELK
301: LLTKWYKEQD FESKLPPYYR DRIVELHLAT LAYINPKYSR VRIILTMIYT IQIILDDTCD RYASLREVES LAATIERWDH NDHAMEGLPD YLKSVAKFIF
401: HTFQEFEREV SSESGGSYSL KATIEDCKRM MRSNLQLAKW AVTGHLPSFD EYLDVAGVEI AVYFTVAGIL LGMENINKKE AYEWLIFRDK LVRAMSTKAR
501: LVNDLFGYKD DMRRGYVTNS INCYKKQYGV TEEEAFRKLH QMVADGDKMM NEEFLKPINV PHQVLKAVLD TLRAINICYD NEDGFTRLNG NLKNYITSMY
601: VDL

Arabidopsis Description

TPS28Terpenoid synthase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9C748]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.