Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82478 | Canola | cytosol | 82.41 | 58.47 |
| Bra001555.1-P | Field mustard | plastid | 83.73 | 52.47 |
| CDY06577 | Canola | cytosol | 38.32 | 44.51 |
| CDX95274 | Canola | cytosol | 13.39 | 38.35 |
| CDY14934 | Canola | cytosol | 1.57 | 37.5 |
| PGSC0003DMT400070310 | Potato | cytosol | 30.18 | 36.98 |
| AT3G32030.1 | Thale cress | plastid | 58.53 | 36.92 |
| PGSC0003DMT400079785 | Potato | cytosol | 29.66 | 36.33 |
| CDX82475 | Canola | plastid | 51.97 | 34.08 |
| CDY02143 | Canola | plastid | 48.29 | 33.27 |
| CDY39124 | Canola | cytoskeleton, cytosol, plastid | 48.03 | 32.74 |
| CDX98470 | Canola | plastid | 49.34 | 32.19 |
| CDY71184 | Canola | cytosol | 28.08 | 32.04 |
| CDX75776 | Canola | plastid | 48.82 | 31.69 |
| CDY32356 | Canola | plastid | 50.66 | 31.13 |
| CDX75775 | Canola | plastid | 39.37 | 30.99 |
| CDX87217 | Canola | plastid | 48.82 | 30.95 |
| CDY39119 | Canola | plastid | 48.82 | 30.9 |
| CDY23121 | Canola | cytosol | 26.77 | 26.84 |
| CDY69236 | Canola | cytosol | 30.97 | 24.38 |
| GSMUA_Achr6P24330_001 | Banana | cytosol | 8.92 | 24.11 |
| CDY66920 | Canola | cytosol | 20.73 | 23.87 |
| CDY27296 | Canola | cytosol | 12.07 | 23.59 |
| GSMUA_Achr6P24340_001 | Banana | cytosol | 9.19 | 23.49 |
| CDY68962 | Canola | cytosol | 30.45 | 23.02 |
| CDY53129 | Canola | cytosol | 14.44 | 21.48 |
| CDY53648 | Canola | cytosol | 14.44 | 21.48 |
| CDY41707 | Canola | plastid | 32.55 | 21.31 |
| CDX98661 | Canola | cytosol | 30.97 | 21.18 |
| CDY63249 | Canola | cytosol | 30.18 | 20.68 |
| PGSC0003DMT400075074 | Potato | cytosol | 11.29 | 20.67 |
| Solyc01g101190.2.1 | Tomato | cytosol | 29.66 | 20.47 |
| CDY49723 | Canola | plastid | 31.76 | 20.3 |
| CDY62515 | Canola | cytosol | 21.0 | 19.95 |
| CDY54750 | Canola | cytosol | 21.0 | 19.95 |
| CDY13053 | Canola | extracellular | 28.61 | 19.71 |
| CDX76457 | Canola | plastid | 30.97 | 19.63 |
| CDX74453 | Canola | cytosol | 27.3 | 19.59 |
| CDX98659 | Canola | plastid | 31.23 | 19.26 |
| CDX76471 | Canola | plastid | 30.45 | 19.24 |
| Solyc01g101220.1.1 | Tomato | cytosol | 8.4 | 19.05 |
| CDY09324 | Canola | plastid | 29.92 | 19.03 |
| CDY14933 | Canola | cytosol | 23.62 | 18.44 |
| CDY42473 | Canola | cytosol | 27.03 | 18.33 |
| PGSC0003DMT400047124 | Potato | cytosol | 14.7 | 18.01 |
| CDY54565 | Canola | plastid | 24.93 | 16.52 |
| CDY12909 | Canola | cytosol | 9.97 | 16.38 |
| PGSC0003DMT400050941 | Potato | cytosol | 9.97 | 15.2 |
| CDX76827 | Canola | plastid | 21.78 | 14.85 |
| CDX83560 | Canola | plastid | 21.26 | 14.34 |
| CDX95273 | Canola | plastid | 15.49 | 14.08 |
| CDY70719 | Canola | cytosol | 12.86 | 14.08 |
| CDY13587 | Canola | plastid | 21.52 | 13.92 |
| CDX83558 | Canola | plastid | 21.26 | 13.75 |
| CDX90785 | Canola | plastid | 21.0 | 13.49 |
| CDY21487 | Canola | plastid | 20.73 | 13.28 |
| CDX83208 | Canola | plastid | 20.21 | 12.94 |
| CDY13590 | Canola | endoplasmic reticulum, extracellular, plastid | 21.52 | 12.01 |
| KRG93110 | Soybean | mitochondrion | 8.66 | 11.15 |
| CDY13589 | Canola | plastid | 14.44 | 9.87 |
| CDY68676 | Canola | cytosol | 9.71 | 9.84 |
| CDY67821 | Canola | cytosol | 4.72 | 9.28 |
| Os02t0458100-01 | Rice | plastid | 9.45 | 9.21 |
| CDX82477 | Canola | plastid | 6.82 | 8.67 |
| CDY61957 | Canola | plastid | 8.14 | 8.2 |
| CDY68788 | Canola | endoplasmic reticulum, golgi | 4.99 | 4.52 |
| CDY15827 | Canola | cytosol | 1.57 | 3.87 |
| VIT_18s0001g05430.t01 | Wine grape | cytosol | 4.72 | 3.73 |
| CDY01639 | Canola | cytosol | 1.84 | 3.63 |
| CDY18347 | Canola | cytosol | 1.57 | 3.61 |
| VIT_18s0001g04200.t01 | Wine grape | cytosol | 1.05 | 3.36 |
| CDY09325 | Canola | plastid | 2.36 | 3.33 |
| VIT_18s0001g05460.t01 | Wine grape | cytosol, mitochondrion | 2.62 | 3.23 |
| CDY72187 | Canola | cytosol, mitochondrion, nucleus, plastid | 1.57 | 2.39 |
| VIT_18s0001g04510.t01 | Wine grape | plastid | 1.84 | 2.29 |
| CDY12910 | Canola | plastid | 0.79 | 2.01 |
Protein Annotations
| Gene3D:1.10.600.10 | MapMan:9.1.4.2 | GO:A0A078CI75 | EnsemblPlants:CDX75774 | ProteinID:CDX75774 | ProteinID:CDX75774.1 |
| GO:GO:0000287 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0010333 | GO:GO:0016829 |
| EnsemblPlantsGene:GSBRNA2T00123718001 | InterPro:IPR008949 | InterPro:Isoprenoid_synthase_dom_sf | PFAM:PF03936 | PANTHER:PTHR31225 | PANTHER:PTHR31225:SF22 |
| SUPFAM:SSF48576 | TMHMM:TMhelix | InterPro:Terpene_cyclase_like_1_C | InterPro:Terpene_synthase_metal-bd | UniParc:UPI0004EE2534 | SEG:seg |
Description
BnaC03g38570D
Coordinates
chrLK031805:-:557043..560054
Molecular Weight (calculated)
44967.0 Da
IEP (calculated)
7.919
GRAVY (calculated)
-0.121
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKIINPRNS FLLVEKREVR RKEKNKEIKK SVCFIYVVHF YCCLVFINVY NFFIKKFILL KTVYNSSYTL IIYFIKKWLA WWNNLDVPSK LPYVRDRIVE
101: THFPALGPYF EPRYSLGRII MTKIIIVVVI LDDTCDAYGT FPEVKSLIDF LQRWDLGAIE ELQGYLRIVA RTLLETLGEI EREMKPRGRS ASVQHTIDEI
201: KSIGRAYLAI SNWARAGHVP TFEEYMEVAM VTAGAGMDDF ASYSFIAMED CDEKPLYEWF NSKPRIFQAL CVMYRLKNDI ATYELEMKRG EVANGVNCYM
301: KQHDVTKEET VEEFNKIYRE NYKIMMEEFL TTKCVPRQIL MRCLNISRTF DVIYKEGDGY TEPLENLKDM ITSFFRHPIP L
101: THFPALGPYF EPRYSLGRII MTKIIIVVVI LDDTCDAYGT FPEVKSLIDF LQRWDLGAIE ELQGYLRIVA RTLLETLGEI EREMKPRGRS ASVQHTIDEI
201: KSIGRAYLAI SNWARAGHVP TFEEYMEVAM VTAGAGMDDF ASYSFIAMED CDEKPLYEWF NSKPRIFQAL CVMYRLKNDI ATYELEMKRG EVANGVNCYM
301: KQHDVTKEET VEEFNKIYRE NYKIMMEEFL TTKCVPRQIL MRCLNISRTF DVIYKEGDGY TEPLENLKDM ITSFFRHPIP L
001: MEAARMGFRA KTLPHLGNGT RLPLKTKLSL FPMHLLQNHT TLSRRSTKLN LCVKACSKTS GVESSRPLPH SAPDLWGDHI LSVPTENSEF DTLETEIESI
101: KPKVRNMLMS SHKTDKERIC LIHLLICLGT FHYFEKEIEE ILEQAFRKLD MLFTDEDDLE TTAIMFEVFR LYGHKISCDV FDRFKGVDAK FKEHLVSDVR
201: GMLQLYEAAH LATPFETILD EALSFTRYHL ESLAGQQATA PHISRHILNA LYKPRFLKME IIAAREYIHF YQKEGHDETL LKFAKLNFNF CQLHYVRELK
301: TLTKWWKDID LPYKLPYIRD RLLETFIGVM AVYLEPHYSL GRIIATKVSQ VIVVMDDTCD AYGTFSEVRS LIDSLERWDP GAIDKLPSCL RIVIQSIVET
401: MEDIEREMKP RGRSSSVQDT VEEIKIMGRA YAEISKWARA GHVPTFDDYI ELGLDSSGIR CFAMYSFISM EDCEENQTNA WFKSKPKMLR ALSVIFRLTN
501: DIAGFEEEMR RGEVVNGVNC YVKQHNVTKE LAVREIKKMI RDNYKIMMEE FLTIKSVSRP ILVRCFNIVR LVNLYYEEGD NFTNPNGKLK DLITSLFFHP
601: LPL
101: KPKVRNMLMS SHKTDKERIC LIHLLICLGT FHYFEKEIEE ILEQAFRKLD MLFTDEDDLE TTAIMFEVFR LYGHKISCDV FDRFKGVDAK FKEHLVSDVR
201: GMLQLYEAAH LATPFETILD EALSFTRYHL ESLAGQQATA PHISRHILNA LYKPRFLKME IIAAREYIHF YQKEGHDETL LKFAKLNFNF CQLHYVRELK
301: TLTKWWKDID LPYKLPYIRD RLLETFIGVM AVYLEPHYSL GRIIATKVSQ VIVVMDDTCD AYGTFSEVRS LIDSLERWDP GAIDKLPSCL RIVIQSIVET
401: MEDIEREMKP RGRSSSVQDT VEEIKIMGRA YAEISKWARA GHVPTFDDYI ELGLDSSGIR CFAMYSFISM EDCEENQTNA WFKSKPKMLR ALSVIFRLTN
501: DIAGFEEEMR RGEVVNGVNC YVKQHNVTKE LAVREIKKMI RDNYKIMMEE FLTIKSVSRP ILVRCFNIVR LVNLYYEEGD NFTNPNGKLK DLITSLFFHP
601: LPL
Arabidopsis Description
TPS22Terpenoid synthase 22 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ27]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.