Factsheet for PGSC0003DMT400075074

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g101220.1.1	Tomato	cytosol	57.69	71.43
PGSC0003DMT400062798	Potato	cytosol, mitochondrion	30.29	47.01
VIT_18s0001g04200.t01	Wine grape	cytosol	26.44	46.22
PGSC0003DMT400047124	Potato	cytosol	65.87	44.05
PGSC0003DMT400050941	Potato	cytosol	47.12	39.2
PGSC0003DMT400055897	Potato	cytosol	22.6	38.84
PGSC0003DMT400089009	Potato	cytosol	26.92	34.78
CDY27296	Canola	cytosol	31.73	33.85
CDY18347	Canola	cytosol	22.12	27.71
PGSC0003DMT400079785	Potato	cytosol	38.94	26.05
PGSC0003DMT400070310	Potato	cytosol	38.94	26.05
Bra027609.1-P	Field mustard	cytosol	33.17	23.96
CDY70719	Canola	cytosol	37.02	22.13
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	30.29	20.32
Bra012515.1-P	Field mustard	extracellular	23.56	19.84
CDY67821	Canola	cytosol	17.31	18.56
Bra020921.1-P	Field mustard	cytosol	35.1	18.02
VIT_18s0001g04510.t01	Wine grape	plastid	26.44	17.97
CDY06577	Canola	cytosol	25.96	16.46
Bra021566.1-P	Field mustard	plastid	39.42	16.14
CDY68962	Canola	cytosol	38.46	15.87
CDX82478	Canola	cytosol	40.38	15.64
AT5G48110.1	Thale cress	plastid	25.0	15.34
CDX82477	Canola	plastid	22.12	15.33
Bra012513.1-P	Field mustard	cytosol	34.62	15.16
VIT_18s0001g05430.t01	Wine grape	cytosol	35.1	15.15
Bra035927.1-P	Field mustard	mitochondrion, plastid	41.35	15.14
CDX75776	Canola	plastid	41.83	14.82
AT3G14540.1	Thale cress	plastid	42.79	14.78
CDY14933	Canola	cytosol	34.62	14.75
Bra001557.1-P	Field mustard	plastid	42.79	14.74
CDX95273	Canola	plastid	29.33	14.56
Bra012955.1-P	Field mustard	plastid	41.83	14.52
CDY01639	Canola	cytosol	13.46	14.51
CDX87217	Canola	plastid	41.83	14.48
AT3G14490.1	Thale cress	plastid	41.83	14.48
CDY23121	Canola	cytosol	26.44	14.47
CDX98661	Canola	cytosol	38.46	14.36
PGSC0003DMT400015998	Potato	plastid	39.9	14.29
AT3G29410.1	Thale cress	plastid	41.35	14.26
AT3G14520.1	Thale cress	plastid	41.35	14.21
AT5G44630.1	Thale cress	cytosol	37.98	14.18
CDY39124	Canola	cytoskeleton, cytosol, plastid	37.98	14.13
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	37.5	13.95
CDX74453	Canola	cytosol	35.58	13.94
CDY69236	Canola	cytosol	32.21	13.84
Bra001555.1-P	Field mustard	plastid	40.38	13.82
AT1G48820.1	Thale cress	mitochondrion, plastid	37.02	13.73
AT1G31950.3	Thale cress	cytosol, endoplasmic reticulum, mitochondrion, plastid, vacuole	39.9	13.65
Bra021560.1-P	Field mustard	plastid	39.42	13.62
CDY39119	Canola	plastid	39.42	13.62
AT1G70080.1	Thale cress	mitochondrion	39.9	13.58
Bra002165.1-P	Field mustard	cytosol	35.58	13.31
AT1G33750.1	Thale cress	mitochondrion, plastid	38.46	13.27
CDX82475	Canola	plastid	37.02	13.25
AT4G20200.1	Thale cress	plastid	38.46	13.24
CDY13053	Canola	extracellular	35.1	13.2
CDY71184	Canola	cytosol	21.15	13.17
CDY63249	Canola	cytosol	35.1	13.13
Bra028251.1-P	Field mustard	cytosol	35.1	13.11
Bra039519.1-P	Field mustard	cytosol	35.1	13.11
CDX98470	Canola	plastid	36.54	13.01
CDX76457	Canola	plastid	37.5	12.98
CDY54565	Canola	plastid	35.58	12.87
AT4G13280.2	Thale cress	cytosol	34.13	12.82
AT4G13300.1	Thale cress	cytosol	34.13	12.82
Bra027931.1-P	Field mustard	plastid	37.02	12.81
Bra021564.1-P	Field mustard	plastid	37.02	12.77
AT4G15870.1	Thale cress	plastid	36.54	12.71
AT3G29190.1	Thale cress	plastid	36.54	12.65
PGSC0003DMT400029354	Potato	cytosol	17.31	12.59
AT4G20210.1	Thale cress	plastid	36.06	12.5
AT4G20230.2	Thale cress	plastid	37.02	12.44
CDX76471	Canola	plastid	36.06	12.44
Bra002968.1-P	Field mustard	plastid	23.08	12.44
AT3G32030.1	Thale cress	plastid	36.06	12.42
AT1G66020.1	Thale cress	plastid	35.58	12.37
CDY09324	Canola	plastid	35.58	12.35
Bra020953.1-P	Field mustard	plastid	36.06	12.3
PGSC0003DMT400029265	Potato	cytosol	30.29	12.28
AT3G29110.1	Thale cress	plastid	35.1	12.27
CDY02143	Canola	plastid	32.21	12.12
CDX75775	Canola	plastid	27.88	11.98
CDX98659	Canola	plastid	35.58	11.97
AT2G23230.2	Thale cress	plastid	35.1	11.95
CDY32356	Canola	plastid	35.58	11.94
KRG93110	Soybean	mitochondrion	16.83	11.82
Bra002714.1-P	Field mustard	plastid	33.17	11.71
CDY49723	Canola	plastid	32.69	11.41
CDX75774	Canola	cytosol, golgi, mitochondrion, plasma membrane	20.67	11.29
AT1G48800.1	Thale cress	mitochondrion, plastid	32.69	11.28
PGSC0003DMT400067594	Potato	cytosol	12.98	11.11
CDY41707	Canola	plastid	30.77	11.0
CDY42473	Canola	cytosol	27.4	10.14
CDY09325	Canola	plastid	12.5	9.63
PGSC0003DMT400029266	Potato	cytosol	17.31	8.63
PGSC0003DMT400095524	Potato	cytosol	17.31	8.18
PGSC0003DMT400029275	Potato	cytosol	10.1	7.75
CDX95274	Canola	cytosol	1.92	3.01
CDY14934	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:9.1.4.2	GO:GO:0000287	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949
InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M1CUM2	PFAM:PF01397	PFAM:PF03936	EnsemblPlantsGene:PGSC0003DMG402029202
PGSC:PGSC0003DMG402029202	EnsemblPlants:PGSC0003DMT400075074	PANTHER:PTHR44946	SUPFAM:SSF48239	SUPFAM:SSF48576	InterPro:Terpene_synth_N
InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00029683E8	:	:

Description

Vetispiradiene synthase [Source:PGSC_GENE;Acc:PGSC0003DMG402029202]

Coordinates

chr00:-:13988028..13989184

Molecular Weight (calculated)

23771.0 Da

IEP (calculated)

5.125

GRAVY (calculated)

-0.300

Length

208 amino acids

Sequence
(BLAST)

001: SLSNDIKGLL NLYEASHVRT HGEDILEEAL AFSTAHLESA APHLKSPLSK QVTHALAKFL HKSIPRVETR YFISIYEEEE FKNDVLLRFA KLDFNLLQML
101: HKQELSEVSR WWKDLDFVTT LPYARDRAAE CYFWTVGVYA EPQYSQARVM FAKTIAMISI VDDTFDAYGI LKELEVYTDA IQSQDGASEP FSSMDARPSG
201: DNCYSGKR

Best Arabidopsis Sequence Match ( AT5G23960.1 )
(BLAST)

001: MGSEVNRPLA DFPANIWEDP LTSFSKSDLG TETFKEKHST LKEAVKEAFM SSKANPIENI KFIDALCRLG VSYHFEKDIV EQLDKSFDCL DFPQMVRQEG
101: CDLYTVGIIF QVFRQFGFKL SADVFEKFKD ENGKFKGHLV TDAYGMLSLY EAAQWGTHGE DIIDEALAFS RSHLEEISSR SSPHLAIRIK NALKHPYHKG
201: ISRIETRQYI SYYEEEESCD PTLLEFAKID FNLLQILHRE ELACVTRWHH EMEFKSKVTY TRHRITEAYL WSLGTYFEPQ YSQARVITTM ALILFTALDD
301: MYDAYGTMEE LELFTDAMDE WLPVVPDEIP IPDSMKFIYN VTVEFYDKLD EELEKEGRSG CGFHLKKSLQ KTANGYMQEA KWLKKDYIAT FDEYKENAIL
401: SSGYYALIAM TFVRMTDVAK LDAFEWLSSH PKIRVASEII SRFTDDISSY EFEHKREHVA TGIDCYMQQF GVSKERAVEV MGNIVSDAWK DLNQELMRPH
501: VFPFPLLMRV LNLSRVIDVF YRYQDAYTNP KLLKEHIVSL LIETIPI

Arabidopsis Description

TPS21Alpha-humulene/(-)-(E)-beta-caryophyllene synthase [Source:UniProtKB/Swiss-Prot;Acc:Q84UU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.