Factsheet for Bra002968.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	extracellular
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18347	Canola	cytosol	39.64	92.17
CDY42473	Canola	cytosol	94.04	64.59
Bra012515.1-P	Field mustard	extracellular	33.68	52.63
Bra027609.1-P	Field mustard	cytosol	35.75	47.92
AT4G15870.1	Thale cress	plastid	66.58	42.98
VIT_18s0001g04200.t01	Wine grape	cytosol	11.66	37.82
Bra027931.1-P	Field mustard	plastid	55.44	35.61
Bra028251.1-P	Field mustard	cytosol	48.96	33.93
Bra002714.1-P	Field mustard	plastid	50.52	33.11
Bra020953.1-P	Field mustard	plastid	51.81	32.79
Bra002165.1-P	Field mustard	cytosol	46.11	32.01
Bra039519.1-P	Field mustard	cytosol	45.85	31.78
Bra012513.1-P	Field mustard	cytosol	38.08	30.95
PGSC0003DMT400050941	Potato	cytosol	17.36	26.8
VIT_18s0001g04510.t01	Wine grape	plastid	20.73	26.14
VIT_18s0001g05460.t01	Wine grape	cytosol, mitochondrion	20.98	26.13
Bra001557.1-P	Field mustard	plastid	40.41	25.83
PGSC0003DMT400047124	Potato	cytosol	18.91	23.47
Bra001555.1-P	Field mustard	plastid	36.79	23.36
Bra021563.1-P	Field mustard	cytoskeleton, cytosol, plastid	33.68	23.26
Bra020921.1-P	Field mustard	cytosol	24.35	23.21
PGSC0003DMT400075074	Potato	cytosol	12.44	23.08
Bra012955.1-P	Field mustard	plastid	35.49	22.87
Bra021560.1-P	Field mustard	plastid	34.97	22.43
Bra035927.1-P	Field mustard	mitochondrion, plastid	32.9	22.36
Bra021564.1-P	Field mustard	plastid	34.2	21.89
Os02t0458100-01	Rice	plastid	21.76	21.48
Bra021566.1-P	Field mustard	plastid	27.46	20.87
Solyc01g101190.2.1	Tomato	cytosol	29.02	20.29
KRG93110	Soybean	mitochondrion	14.77	19.26
Solyc01g101220.1.1	Tomato	cytosol	8.03	18.45
VIT_18s0001g05430.t01	Wine grape	cytosol	22.28	17.84
Bra000727.1-P	Field mustard	plastid	21.5	16.31
Bra021082.1-P	Field mustard	cytosol	22.8	16.12
Bra000568.1-P	Field mustard	plastid	24.35	15.8
Bra025163.1-P	Field mustard	cytosol	21.5	14.82
Bra038504.1-P	Field mustard	plastid	19.95	14.34
Bra027079.1-P	Field mustard	plastid	10.88	12.61
PGSC0003DMT400079785	Potato	cytosol	7.77	9.65
PGSC0003DMT400070310	Potato	cytosol	7.77	9.65
Bra025164.1-P	Field mustard	cytosol	22.8	8.29
GSMUA_Achr6P24340_001	Banana	cytosol	0.52	1.34
GSMUA_Achr6P24330_001	Banana	cytosol	0.26	0.71

Protein Annotations

Gene3D:1.10.600.10	Gene3D:1.50.10.130	MapMan:50.4.2	EnsemblPlantsGene:Bra002968	EnsemblPlants:Bra002968.1	EnsemblPlants:Bra002968.1-P
GO:GO:0000287	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0010333	GO:GO:0016829	InterPro:IPR008949	InterPro:IPR036965	InterPro:Isoprenoid_synthase_dom_sf	UniProt:M4CFI6
PFAM:PF01397	PFAM:PF03936	PANTHER:PTHR31045	PANTHER:PTHR31045:SF4	SUPFAM:SSF48239	SUPFAM:SSF48576
InterPro:Terpene_synth_N	InterPro:Terpene_synth_N_sf	InterPro:Terpene_synthase_metal-bd	InterPro:Terpenoid_cyclase/PrenylTrfase	UniParc:UPI00025440B5	SEG:seg

Description

AT4G15870 (E=2e-092) ATTS1 | ATTS1; lyase/ magnesium ion binding

Coordinates

chrA10:+:6382576..6384708

Molecular Weight (calculated)

43849.9 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.031

Length

386 amino acids

Sequence
(BLAST)

001: MISACKLFSL PLISFPGKSP KLFPLKAFPS QTGEVQESER LFKKLPPSKW GDHFLSAHVD ASEMDTLERE IEAVKPVVSG MIMSSQCLES TKKKILMIYL
101: LVSLGLMYLF EDEIEECLKE GFGKIEDMLA GENDLYTVST IFWVFRTYGY NISSGTDVFE RFKGGNGNFK ECLIEDAKGM VSLYEAAHLG TTADYILDEA
201: LSFTTIKLES LAETGAISCH ISTRIRNALC MPQHFNAEMV FTREYISFYE QEEYHNKMLL KFAKLNFKFL QLNWIQELKT FTKWAPDCAD SLPEYMKTVF
301: KFAWNVFKEC ESEGISEEGL SFNVQGLLEE FKIYLRANLC FAEWAHTDVV PTFDEYLEIG GVEVSMQVSI AGSLLGLGKT AREVLK

Best Arabidopsis Sequence Match ( AT1G48800.1 )
(BLAST)

001: MEAIRVFGPK LGSRLSIRSH TTAFPACKLS RFPLTSFPGK HAHLVLLKAT TIPLASGDKE NNRKFEKLGP SEWGNQFLFA HVDLSEMDAL EREIEALKPK
101: VRDMFMSFKG MKSNKKNLFL IYLLVSLGLA HHFEDEIEES VKGCSQEMVE MMDGENDLYT VSIIFWVFRT YGHNISSDIF NRFKGHNGKF KECLATDAKG
201: ILSLYEAAHM GTTTDYILDE ALSFTLSYLE SLAANGTCKP NLVRRIRNAL GLLQNKNVEI LVAKEYIRFY EQEEDCDKTI LEFSMLNLKF LQLHYLQELK
301: LLTKWYKEQD FESKLPPYYR DRIVELHLAT LAYINPKYSR VRIILTMIYT IQIILDDTCD RYASLREVES LAATIERWDH NDHAMEGLPD YLKSVAKFIF
401: HTFQEFEREV SSESGGSYSL KATIEDCKRM MRSNLQLAKW AVTGHLPSFD EYLDVAGVEI AVYFTVAGIL LGMENINKKE AYEWLIFRDK LVRAMSTKAR
501: LVNDLFGYKD DMRRGYVTNS INCYKKQYGV TEEEAFRKLH QMVADGDKMM NEEFLKPINV PHQVLKAVLD TLRAINICYD NEDGFTRLNG NLKNYITSMY
601: VDL

Arabidopsis Description

TPS28Terpenoid synthase 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9C748]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.